PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03067.1.p
Common NameEUGRSUZ_G03067, LOC104454400
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 664aa    MW: 72283.8 Da    PI: 8.1213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07256276526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C+ Gd+C +aHg
  Eucgr.G03067.1.p 256 PCPEFRK-GSCQKGDSCEYAHG 276
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.35E-1437138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-1559163IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0126191IPR002110Ankyrin repeat
PROSITE profilePS5029715.45961141IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-861128IPR020683Ankyrin repeat-containing domain
CDDcd002049.87E-1363160No hitNo description
PROSITE profilePS5008810.47296131IPR002110Ankyrin repeat
SMARTSM002480.02296128IPR002110Ankyrin repeat
PROSITE profilePS5010313.544251278IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5251277IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4256277IPR000571Zinc finger, CCCH-type
SMARTSM0035637286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869286310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEGESYFEKD EKYSNCSILL ELSASDDLPA FERKAKEKGC NIDGASFWYG RRIGSRKMGL  60
EERTPLMVAS LFGSSRVVKY ILESGKVDVN RACGSDKVTA LHCAVASGSA SAVEVVKLLL  120
HASADANCID GNGKKPIDVI ALPLKSRGDS RRKLMELLLK GDNSDGEFES HEEKPIAALQ  180
ASKEGSEKKE YQFPVDISLP DINVGIYSTD EFRMYAFKVK PCSRAYSHDW TECPFVHPGE  240
NARRRDPRKY PYSCVPCPEF RKGSCQKGDS CEYAHGVFES WLHPAQYRTR LCKDETGCAR  300
KVCFFAHKPE ELRPVYASTG SAMPSPKSYS SSGLDMSTLS PLSISSPSAS LPVTSTAPMS  360
PLAASSSPMS VNMWQSKANK LSPPMLQLSG SRLKTALSAR DLDLEMELRG LESQMATQQH  420
QLMEEISRLS SPSSCFSSRI GEVKPTNLDD VFGSPDPALL PQLQGLSRPS TPSQLQSPTG  480
LQMRQNATQF RGAYQSNANA LSSPAMKQAP SYGFDSSSAV AAAVMNSRSA AFAKRSQSFI  540
DRGMACPGIA NSSPMMSSAM SSWSSPHGKL DWGVQGDELN RLRKAASFKM RSSTGAGANT  600
VSAAAMADEP DISWVSSLVK DVPSAEDAMF AAEKGQRTYG KDIRERITPW VEQLYREVPR  660
MAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03067.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067533.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
TrEMBLA0A059BHU50.0A0A059BHU5_EUCGR; Uncharacterized protein
STRINGXP_010067533.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-170C3H family protein