PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G02955.1.p | ||||||||
Common Name | EUGRSUZ_G02955, LOC104454318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24376.4 Da PI: 4.8166 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC++dCv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++ Eucgr.G02955.1.p 7 SCGACKFLRRKCTSDCVFAPYFCYDQaSTHFAAVHKVFGASNVSKLLLHLPVHTRSDAAITISYEALARMRDPIYGCVAHIFALQEQVANLQE 99 6************************9779**************************************************************** PP DUF260 93 elallkee 100 e++ l+++ Eucgr.G02955.1.p 100 EIEILGTQ 107 **998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.356 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-37 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS DCVFAPYFCY DQASTHFAAV HKVFGASNVS KLLLHLPVHT 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGVGVPSWRN 120 SPVPGNPSNF GPQFSGSDAM NVQFYLNHQQ DPLLPQAEAA TTTNLQALES SMNEEFPPIY 180 GWEDQNPFCD NYPNLLERLF EGVDREAFSS CSWLNGGNGL GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 3 | 114 | 7 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 3 | 114 | 7 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G02955.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067432.1 | 1e-167 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q9LHS8 | 4e-60 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A059BH53 | 1e-166 | A0A059BH53_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067432.1 | 1e-167 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-62 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G02955.1.p |
Entrez Gene | 104454318 |
Publications ? help Back to Top | |||
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