PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02940.1.p
Common NameEUGRSUZ_G02940
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 683aa    MW: 75888.8 Da    PI: 5.2089
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.12e-10133867222374
              GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                       a+L+++++++sp+gd mqR+a+yf+++L+arla+                  s ++ +a  lf  ++P++k+s++  N++I++ +e+++r+Hi
  Eucgr.G02940.1.p 338 AMLKQIRQHSSPTGDGMQRIAHYFANGLEARLAG------------------SGTQYTAIILFLAACPFPKISNFFSNKTIVNVAENATRLHI 412
                       69********************************..................3344567789******************************* PP

              GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                        Df+i +G+QWp+L++ L+sRp+gpp++RiTg++ p++g   +e++eetg+rL+++A+++gvpfefn+ +a+r+++++le+Lr++++E+l+Vn
  Eucgr.G02940.1.p 413 TDFGILYGFQWPCLIKRLSSRPGGPPKIRITGIDLPQPGfkPAERVEETGRRLKNYAKTFGVPFEFNA-IAQRWDTIQLEDLRIDKDEVLVVN 504
                       **************************************999***************************.7*********************** PP

              GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                       ++++l++lld++v +es+rd v++l+++++P v+++   +  ++++ F  rf eal ++s++fd+l++++pr+  er+ +E+  +g  ++nv+
  Eucgr.G02940.1.p 505 SMFRLKNLLDDTVVTESPRDIVVNLMRKMNPAVFILGVTNGAYSAPFFISRFQEALFHFSTMFDMLDTNVPRDIPERMLIEKL-FGCGAMNVI 596
                       *********************************************************************************98.********* PP

              GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       aceg+er+er et+++W+ r+++ GF+p+pl+e+++k+ak  ++  + + + v+e+ ++l+lgWk+r + ++S W+
  Eucgr.G02940.1.p 597 ACEGSERIERPETYKQWQVRIMRGGFTPLPLNEEIVKTAKDRVKSDYHKDFVVDENGQWLLLGWKGRIVRAFSTWE 672
                       *********************************************99888*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.268291652IPR005202Transcription factor GRAS
PfamPF035147.0E-99338672IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MDGRVGDVYG RANGRARGDA AATVLPDYDL VNRLKIDDGY DGRNSVGGAV PLSSDLNLAR  60
ELLEDCDFSD VVLNYISDIL MEEDVEEKTC TFQESAALQA AEESFYHDSP ADLSAIDFGD  120
QCNLCGYHSV KPGWSCDVGE PRASVTSSVS SSYTSVSSPN SSNSPITDGF ADYPVSILRL  180
PELLSEKESA FHFKKGIEEA SKFLPDISSL FADLEKSSLS FKIPENDAIN TVPKVENTMG  240
SGHLNKSRGK KNPHSEDVCL EESRSHKHSS LSTESAVSSD MFDAVLLSCV KDDPLREELQ  300
SAQQNGQTKG SNGEKGQFKM QGREKDMADL RMLLTLCAML KQIRQHSSPT GDGMQRIAHY  360
FANGLEARLA GSGTQYTAII LFLAACPFPK ISNFFSNKTI VNVAENATRL HITDFGILYG  420
FQWPCLIKRL SSRPGGPPKI RITGIDLPQP GFKPAERVEE TGRRLKNYAK TFGVPFEFNA  480
IAQRWDTIQL EDLRIDKDEV LVVNSMFRLK NLLDDTVVTE SPRDIVVNLM RKMNPAVFIL  540
GVTNGAYSAP FFISRFQEAL FHFSTMFDML DTNVPRDIPE RMLIEKLFGC GAMNVIACEG  600
SERIERPETY KQWQVRIMRG GFTPLPLNEE IVKTAKDRVK SDYHKDFVVD ENGQWLLLGW  660
KGRIVRAFST WEPSTNPYSP KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-5033767123374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02940.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067413.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A059BHG70.0A0A059BHG7_EUCGR; Uncharacterized protein
STRINGXP_010067413.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-161SCARECROW-like 14