PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02939.1.p
Common NameEUGRSUZ_G02939, LOC104454303
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 747aa    MW: 82541.5 Da    PI: 5.834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02939.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.54.9e-1173657351373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+ v+ +d + a+++L+++++++sp+gd mqR+a+yf+++L+arla+s++++y  + +++ts    +++l+a++l   ++P+ k+
  Eucgr.G02939.1.p 365 LRTLLTLCAQSVAVDDRRSANEMLKQIRQHSSPTGDGMQRMAHYFANGLEARLAGSGTQIYTGIMSKPTS---AASVLKAYRLMLAACPFKKI 454
                       5789************************************************************999999...9999**************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s++  N++I++ +e+++r+HiiDf+i +G+ Wp+L++ L+sRp+gpp++RiTg++ p++g   +e++eetg+rL+++A+++gvpfefn+ +a+
  Eucgr.G02939.1.p 455 SQFFSNKTIMNVAENATRLHIIDFGILYGFPWPCLIKRLSSRPGGPPKIRITGIDFPQPGfkPAERVEETGRRLKNYAKTFGVPFEFNA-IAQ 546
                       ***********************************************************999***************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       r+++++le+Lr++++E+l+Vn++++l++llde+v +es+rd v++l+++++P v+++   +  ++++ F  rf eal ++s++fd+l++++pr
  Eucgr.G02939.1.p 547 RWDTIQLEDLRIDKDEVLVVNCMHRLKNLLDETVVTESPRDIVVNLMRKMNPAVFILGVTNGAYSAPFFTSRFREALFHFSTIFDMLDTNVPR 639
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +  er+ +E+el+g+e++nv+aceg+er+er et ++W+ r+++ GF+p+pl+e+++++ak  ++ ++ + + ++e+ ++l+lgWk+r + ++
  Eucgr.G02939.1.p 640 DIPERMLIEKELFGWEAMNVIACEGSERIERPETCKQWQVRIMRGGFTPLPLNEEIMETAKDRVKSYYHKDFVIDEDGQWLLLGWKGRIVDAF 732
                       ********************************************************************888********************** PP

              GRAS 371 SaW 373
                       S W
  Eucgr.G02939.1.p 733 STW 735
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.226339716IPR005202Transcription factor GRAS
PfamPF035141.7E-114365735IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MDGRVGGDVY DRANGRECGD AAAAVLLDYN LVNRLKIDDG DDGQNSLGGA VPLSSDLNLA  60
GVAPPLSSVG SEKESAEDCD FSDVVLKYIS EILMEEDVEE KTCMFQESAA LQAAEESFYA  120
VIGKRYPPSL NNHPIFLAEM NHDSPADLSA IDSGDQHNLC GYDSVKPGWS CDVGEPRASV  180
SSSVSSSHTS VSSPYSSNSP ITDGFADSPV SILRLPELLS EKESAFHFKK GVEEASKFLP  240
DNSSLFADLE KSSLSFKIPE NDAINTVPKV EKTMGSGRLN KSRGKKNPHS EDVCLEESRS  300
HKHSSLSTES AVSSDMFDAV LLSCGKDDPL RAELQSVQQN GQTKGSNGKK GRVKKQGRKK  360
DVVDLRTLLT LCAQSVAVDD RRSANEMLKQ IRQHSSPTGD GMQRMAHYFA NGLEARLAGS  420
GTQIYTGIMS KPTSAASVLK AYRLMLAACP FKKISQFFSN KTIMNVAENA TRLHIIDFGI  480
LYGFPWPCLI KRLSSRPGGP PKIRITGIDF PQPGFKPAER VEETGRRLKN YAKTFGVPFE  540
FNAIAQRWDT IQLEDLRIDK DEVLVVNCMH RLKNLLDETV VTESPRDIVV NLMRKMNPAV  600
FILGVTNGAY SAPFFTSRFR EALFHFSTIF DMLDTNVPRD IPERMLIEKE LFGWEAMNVI  660
ACEGSERIER PETCKQWQVR IMRGGFTPLP LNEEIMETAK DRVKSYYHKD FVIDEDGQWL  720
LLGWKGRIVD AFSTWGPSTI TYSPKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-523657355374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02939.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067413.10.0PREDICTED: scarecrow-like protein 30
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059BH420.0A0A059BH42_EUCGR; Uncharacterized protein
STRINGXP_010067413.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein