PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02838.1.p
Common NameEUGRSUZ_G02838, LOC104454218
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 693aa    MW: 76328.1 Da    PI: 7.2345
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02838.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.4e-24132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+sW++++iyr++++r++lt+GW +Fv++++L +gD++vF   +
  Eucgr.G02838.1.p 132 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIVAKDVHGESWKFRHIYRGTPRRHLLTTGWGNFVNQKKLVAGDSIVFL--R 220
                       89****************************986445444..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  Eucgr.G02838.1.p 221 AENGDLCVGIRRA 233
                       488999****997 PP
2Auxin_resp1125.6e-37290373183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+++++FevvY+Pra+t+eF v++++v++a++v+++ GmRfkm feted+s++++ +Gt+++v+ +dp++Wp S+Wr L+
  Eucgr.G02838.1.p 290 AATLAAKGQPFEVVYYPRAGTPEFFVRASSVSTAMQVQWCSGMRFKMPFETEDASRISWfMGTISSVQVADPIHWPSSPWRILQ 373
                       68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-37127235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-30128235IPR015300DNA-binding pseudobarrel domain
CDDcd100178.18E-23131232No hitNo description
SMARTSM010191.2E-23132234IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366132234IPR003340B3 DNA binding domain
PfamPF023622.1E-22132233IPR003340B3 DNA binding domain
PfamPF065071.1E-31290373IPR010525Auxin response factor
PROSITE profilePS5174518.252609687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MVELALDRFM ISVMDSRKES LKRNPQKCLD SQLWHACAGG MVQMPPVNSK VFYFPQGHAE  60
HAQGTVDFGT SQIPPLILCR LAAIKYMADP ENDEVYAKIT LMPMRSDEYH HLDDDGSLGK  120
DGTENLEKVA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TIVAKDVHGE  180
SWKFRHIYRG TPRRHLLTTG WGNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGIG  240
GNDNACGWNS ASGNFGGYSM FAREEGSNLM QKGCGGEFRR KVTGESVLQA ATLAAKGQPF  300
EVVYYPRAGT PEFFVRASSV STAMQVQWCS GMRFKMPFET EDASRISWFM GTISSVQVAD  360
PIHWPSSPWR ILQVSWDEPD LLQNVKSVSP WLVELVSNMP SIHLSHFSPP RKKLRTPPNF  420
PILDQIPVPP FPSNPLGPNS PLCFIPDNIP AGIQGARHAQ FLRSSSDLRL NQLHSGLFPV  480
GSHPLNHTSV STRFSRGAFF GAPEDNNNSI SCLLRMGTSE NSSKENFEKK SPHILLFGQL  540
ILVDQQNSES SSGDTTGRCS SEGNQERMSN SSEGSRNNVL YYNGTVESSS DDGFTGIRRD  600
RASDLDLGTG HCKVFMESEN VGRTLDLSVL GSYDELYRNL RDMFGINGSE RLSKVLYSDA  660
AGAIKNAGDE PFSDFLKTAK RLTIPAGYAM KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-761739441388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409415PRKKLRT
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02838.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067307.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A059BIB70.0A0A059BIB7_EUCGR; Auxin response factor
STRINGXP_010067307.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]