PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02740.1.p
Common NameEUGRSUZ_G02740, LOC104454139
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 413aa    MW: 46579.7 Da    PI: 6.7339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37.5e-54271541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeelv +yLk+k+ gk++++ +vi++vdiyk+ePwdL   +k+k++++ewyfFs  d+kya+g r nrat+sgyWkatg+d++
  Eucgr.G02740.1.p  27 LAPGFRFHPTDEELVIYYLKRKMCGKSFRF-DVIADVDIYKTEPWDLAgkSKLKTRDQEWYFFSALDRKYANGARMNRATSSGYWKATGNDRN 118
                       579**************************9.99**************85348889999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Eucgr.G02740.1.p 119 VQH-ESRVVGLKKTLVFHSGRAPEGKRTNWVMHEYRL 154
                       **9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-6323177IPR003441NAC domain
PROSITE profilePS5100559.18927177IPR003441NAC domain
PfamPF023654.2E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGPETSTPST SEISAPPSAQ KTSSTALAPG FRFHPTDEEL VIYYLKRKMC GKSFRFDVIA  60
DVDIYKTEPW DLAGKSKLKT RDQEWYFFSA LDRKYANGAR MNRATSSGYW KATGNDRNVQ  120
HESRVVGLKK TLVFHSGRAP EGKRTNWVMH EYRLVEEELE KCGNYKDAYV LCRIFHKANL  180
GPPTGHRYAP FVEEEWDGKD NVVPSVETRE EAVPQRNGML QEMPSHVPPV CRNELPTKTQ  240
CLLAVCKSET MGETIDDPSA ICPTNRETAP LLHYKRRRDI DLNSIDSTGS ENSPKKTEGP  300
SSSTITTARS AMNLTCGLST LVEYSLMESL EIKEKPHLPL STFAPANLNT TVPPECLDFI  360
HSLQEEIYKV SIERETLRLE MLSIRSMANV LQSKVEHLTK ENEELKRNVQ DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-532317716168NAC domain-containing protein 19
3swm_B9e-532317716168NAC domain-containing protein 19
3swm_C9e-532317716168NAC domain-containing protein 19
3swm_D9e-532317716168NAC domain-containing protein 19
3swp_A9e-532317716168NAC domain-containing protein 19
3swp_B9e-532317716168NAC domain-containing protein 19
3swp_C9e-532317716168NAC domain-containing protein 19
3swp_D9e-532317716168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02740.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067201.10.0PREDICTED: uncharacterized protein LOC104454139
RefseqXP_010067202.10.0PREDICTED: uncharacterized protein LOC104454139
SwissprotQ9SQY01e-125NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A059BGV90.0A0A059BGV9_EUCGR; Uncharacterized protein
STRINGXP_010067201.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-125NAC domain containing protein 52
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]