PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02506.1.p
Common NameEUGRSUZ_G02506
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 391aa    MW: 43809.9 Da    PI: 5.7764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02506.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52151421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       + pGfrFhPtdeelv +yLk+k+++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++
  Eucgr.G02506.1.p  15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIY 106
                       579***************************.89***************8888999************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  Eucgr.G02506.1.p 107 SSdGSKCIGLKKSLVFYQGRAAKGVKTDWMMHEFRL 142
                       *966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5914167IPR003441NAC domain
PROSITE profilePS5100557.40615167IPR003441NAC domain
PfamPF023651.4E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEESVDCEKS MDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIRQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG SKCIGLKKSL  120
VFYQGRAAKG VKTDWMMHEF RLPSLTDLSS QNIPAHDSWA ICRIFKKTNS TSHRSLAHSY  180
VSTMLPTETT ASETANSLFH SQLSPDTPSF SPSPTKTSSS VHIPPHNITP VFDSSSLVPW  240
TNLDFAIISS NLDPNPNHFL FPPLQETTAS DVSSILQHMS SSMFGDVGRS FESDLNDHQE  300
QFNDGFPLLT LPLEMQVNGA VVGGSGGEEA SSLLPRNPSR DETWEAVRFG GSPYGSDNYL  360
NVGDAWKSNL GWDAMSDLST YYYPTTKCFT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-541717219170NO APICAL MERISTEM PROTEIN
1ut4_B2e-541717219170NO APICAL MERISTEM PROTEIN
1ut7_A2e-541717219170NO APICAL MERISTEM PROTEIN
1ut7_B2e-541717219170NO APICAL MERISTEM PROTEIN
3swm_A3e-541717322174NAC domain-containing protein 19
3swm_B3e-541717322174NAC domain-containing protein 19
3swm_C3e-541717322174NAC domain-containing protein 19
3swm_D3e-541717322174NAC domain-containing protein 19
3swp_A3e-541717322174NAC domain-containing protein 19
3swp_B3e-541717322174NAC domain-containing protein 19
3swp_C3e-541717322174NAC domain-containing protein 19
3swp_D3e-541717322174NAC domain-containing protein 19
4dul_A2e-541717219170NAC domain-containing protein 19
4dul_B2e-541717219170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02506.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066915.20.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-101FEZ_ARATH; Protein FEZ
TrEMBLA0A059BFU90.0A0A059BFU9_EUCGR; Uncharacterized protein
STRINGXP_010066915.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-103NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]