PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02492.1.p
Common NameEUGRSUZ_G02492
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 383aa    MW: 42216.8 Da    PI: 8.649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02492.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1667112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Eucgr.G02492.1.p  67 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 112
                       899*****************************.***********996 PP
2Myb_DNA-binding56.28e-18119162146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Eucgr.G02492.1.p 119 RRAFTEEEEERLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 162
                       678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.20162113IPR017930Myb domain
SMARTSM007173.3E-1466115IPR001005SANT/Myb domain
PfamPF002496.3E-1667112IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-2867160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-2668120IPR009057Homeodomain-like
CDDcd001672.93E-1370111No hitNo description
PROSITE profilePS5129427.255114168IPR017930Myb domain
SMARTSM007172.4E-14118166IPR001005SANT/Myb domain
PfamPF002491.8E-14119161IPR001005SANT/Myb domain
CDDcd001678.06E-12121161No hitNo description
Gene3DG3DSA:1.10.10.604.8E-21121167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGSLSLAAAT ARHGLADLLG ATTSDPIDHR RRKAHGNGVR ESNSTSDEHD GGRVDGEAGG  60
QSKLCARGHW RPAEDTKLKE LVALYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR  120
AFTEEEEERL MQAHRVYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSTAYRRRKL  180
SLSRSPSSGY ARPDETPAGH RDRDDYDDAP ARRDCPASFG NVGVSRWAIG TTAFDHHHHH  240
HQHILGLNNG LSPTSNNGEI LAVQNGFGFL AGRNSNHDDT TASLFHHQTK PCTNSYGACL  300
HPPRWPPPAT TQPSDQDRRA VRDPYAQCCC SDTIALTTAH QVSPSPPPPP PPRECEAPPS  360
PPQPQPPPSS PPFIDFLGVG AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33671677107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02492.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074613e-93AK107461.1 Oryza sativa Japonica Group cDNA clone:002-129-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715352.10.0PREDICTED: uncharacterized protein LOC104455746
TrEMBLA0A059BGH30.0A0A059BGH3_EUCGR; Uncharacterized protein
STRINGXP_010068785.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-74myb domain protein 105