PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02469.1.p
Common NameEUGRSUZ_G02469
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 523aa    MW: 56275.6 Da    PI: 7.1315
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02469.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.21.9e-34249305259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  Eucgr.G02469.1.p 249 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPTCPVKKKVERSL-DGQITEIIYKGQHNHQ 305
                       8****************************************.***************8 PP
2WRKY106.61.3e-33411469159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Eucgr.G02469.1.p 411 LDDGYRWRKYGQKLVKGNPYPRSYYKCTTTGCNVRKHVERASSDPKAVITTYEGKHNHD 469
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30239307IPR003657WRKY domain
PROSITE profilePS5081123.468243307IPR003657WRKY domain
SuperFamilySSF1182902.48E-26246307IPR003657WRKY domain
SMARTSM007743.0E-38248306IPR003657WRKY domain
PfamPF031065.0E-26249305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-37397471IPR003657WRKY domain
SuperFamilySSF1182901.18E-29403471IPR003657WRKY domain
PROSITE profilePS5081138.629406471IPR003657WRKY domain
SMARTSM007742.7E-39411470IPR003657WRKY domain
PfamPF031062.4E-26412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAFANHVPLW AHALGIFPSS RELFSISQFD SGNSSGGGGG GGGGGWLGGM GLGLSPGPMT  60
MVSHLFPDGE DCKSFSQLLS GATAASPTAQ YLGFSFPSAS SAPERTAVLP PGELRFKQSR  120
PDGLAVTQPL FAIPPGLSPG ALLDSPGTFH PVPGHLGMSY QHGFLRMGTQ GLQAQPHHVQ  180
SGYASASSST AALSLGRMQF PPFAVSTSMM NQQNLSLEGP KIIESEPIDF SRPDQRPPVS  240
SFAIDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTHPTCP VKKKVERSLD GQITEIIYKG  300
QHNHQPPKGN KRAKDSGAAN GSSDVEESSQ IPLGLMPQDP ESSQVTPAQF SGTSDSEEVG  360
DADTGADEGD EDEPEPKRRS MEVMAPDAGS VHRTITEPKI IVQTTSEVDL LDDGYRWRKY  420
GQKLVKGNPY PRSYYKCTTT GCNVRKHVER ASSDPKAVIT TYEGKHNHDV PAAKPSSHSV  480
ANSYASQSRQ QQNAELEKHA MFRTSAQQQL TSRLRLKEEQ LT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-41249472878Probable WRKY transcription factor 4
2lex_A4e-41249472878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02469.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066870.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-146WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A059BGX20.0A0A059BGX2_EUCGR; Uncharacterized protein
STRINGXP_010066870.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-129WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]