PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G02345.1.p | ||||||||
Common Name | EUGRSUZ_G02345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14348.7 Da PI: 10.3391 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.7 | 1.6e-21 | 3 | 64 | 33 | 94 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ l +ed g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++ +++l++ Eucgr.G02345.1.p 3 GVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDTVCFQRSTGPDKQLYI 64 567899*********************************************87656666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.112 | 1 | 69 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0076 | 1 | 70 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.79E-19 | 2 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-24 | 2 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-18 | 3 | 65 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.30E-15 | 8 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MKGVLLNFED VGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDTV CFQRSTGPDK 60 QLYIDFKPRG QPPAGPAAPP PPPVQMVRLF GVNIMEVPYC GGGKRMRDVD LLSFECRKKQ 120 QMVVGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-36 | 1 | 79 | 49 | 127 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G02345.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-39 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018823697.1 | 2e-57 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Refseq | XP_018854263.1 | 6e-59 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like, partial | ||||
Swissprot | Q9C6M5 | 8e-45 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A059BGF6 | 1e-88 | A0A059BGF6_EUCGR; Uncharacterized protein | ||||
STRING | XP_009613275.1 | 3e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 3e-45 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G02345.1.p |