PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02067.1.p
Common NameEUGRSUZ_G02067, LOC104453628
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BBR-BPC
Protein Properties Length: 281aa    MW: 31572.3 Da    PI: 10.1466
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind351.12.5e-10712801301
         GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 
                       mddd+ + rn+gyyep+   k +l+lqlms++aerd+k+    r+  + l ++++a+++rd          ++  rd+++++        ++k
  Eucgr.G02067.1.p   1 MDDDALNMRNWGYYEPS--CKGHLNLQLMSTMAERDTKPflpgRDPTI-LVAPNGAYHPRDsvvpdtplqYNY-ARDSWMNQ--------REK 81 
                       9***9999*******99..9*********************9999888.9******************87778.89*****9........789 PP

         GAGA_bind  81 llalllvenslasalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                       ++++l+ +++        + +l++++ ++++q+l+  + l+d+ ++    + +e    e ++ ++ke++++kkrq++  pk++kakk kk   
  Eucgr.G02067.1.p  82 FFNMLPPNHN--------YAMLPESSGAHNMQMLQMpESLRDDRIG----R-IE----EPSPGVKKENPQPKKRQSNGIPKTPKAKKSKK--- 154
                       ******9997........899***********94332445555555....2.22....23578899999***************999999... PP

         GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                        +k++++++   +r+k +kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgaf
  Eucgr.G02067.1.p 155 -PKDNTNPPI--QRAKPPKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTQVSMYPLPMSTKRRGARIAGRKMSQGAF 244
                       .455667776..79******************************************************************************* PP

         GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       kk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
  Eucgr.G02067.1.p 245 KKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 280
                       ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.4E-1151280IPR010409GAGA-binding transcriptional activator
SMARTSM012265.3E-1701280IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPSCKG HLNLQLMSTM AERDTKPFLP GRDPTILVAP NGAYHPRDSV  60
VPDTPLQYNY ARDSWMNQRE KFFNMLPPNH NYAMLPESSG AHNMQMLQMP ESLRDDRIGR  120
IEEPSPGVKK ENPQPKKRQS NGIPKTPKAK KSKKPKDNTN PPIQRAKPPK KSMDVVINGI  180
DMDISGIPIP VCSCTGAPQQ CYRWGCGGWQ SACCTTQVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAK HGTNKFVTIR *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02067.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066541.10.0PREDICTED: protein BASIC PENTACYSTEINE2
SwissprotQ9SKD01e-108BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A059BEL20.0A0A059BEL2_EUCGR; Uncharacterized protein
STRINGXP_010066541.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-106basic pentacysteine 2