PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01639.1.p | ||||||||
Common Name | EUGRSUZ_G01639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 97aa MW: 11010.6 Da PI: 8.0518 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 2 | 80 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p +f+++h k+e+ ++ s r W+vkl+ k +++ vl++GW+ F+++ gL+++D++vF+l++r++ + v++f+ Eucgr.G01639.1.p 2 GVPSEFFRKHLRKSEQ---MVTLKCSDRLWQVKLKSYKPRDTAVLSTGWSLFARETGLRARDVCVFELTDRDNIVFEVSIFS 80 689*******655444...44455688*******98888889**************************99888888998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.7E-5 | 1 | 82 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.51E-16 | 1 | 80 | No hit | No description |
PROSITE profile | PS50863 | 14.043 | 1 | 82 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.24E-16 | 1 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-13 | 2 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-20 | 2 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MGVPSEFFRK HLRKSEQMVT LKCSDRLWQV KLKSYKPRDT AVLSTGWSLF ARETGLRARD 60 VCVFELTDRD NIVFEVSIFS SDGQSIFSSA EVICID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01639.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066143.1 | 9e-63 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Refseq | XP_018732513.1 | 2e-62 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_018732514.1 | 9e-63 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Refseq | XP_018732515.1 | 9e-63 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A059BCP0 | 5e-64 | A0A059BCP0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066143.1 | 3e-62 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01639.1.p |