PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01550.1.p
Common NameEUGRSUZ_G01550
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 526aa    MW: 59480.9 Da    PI: 6.6793
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.73.3e-34101391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka......eekewyfFskrdkkyatgkrknratksgyW 83 
                       lp+G+ F+Ptdeelv++yLk kv+g +     +i+evdi+k+ePw+Lpk    +  +      + +ew+fF  +        r +r+t  g+W
  Eucgr.G01550.1.p  10 LPVGYGFRPTDEELVDHYLKLKVQGFTGVN-CIIPEVDICKWEPWELPKifeeQ--SiippddKVQEWWFFYLQTP------RIQRSTPLGFW 93 
                       799**********************99433.57***************745540..14555445669999988655......7899******* PP

               NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+tg d+++++  +++++g+kktLvf++g+ +++  t+Wv+hey+l
  Eucgr.G01550.1.p  94 KKTGVDRPIKAGdRNREIGTKKTLVFHRGHGKRAIGTKWVIHEYHL 139
                       **********9867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-386164IPR003441NAC domain
PROSITE profilePS5100540.62610164IPR003441NAC domain
PfamPF023657.9E-2011139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MGAVIIPRNL PVGYGFRPTD EELVDHYLKL KVQGFTGVNC IIPEVDICKW EPWELPKIFE  60
EQSIIPPDDK VQEWWFFYLQ TPRIQRSTPL GFWKKTGVDR PIKAGDRNRE IGTKKTLVFH  120
RGHGKRAIGT KWVIHEYHLL TNNLNELFPH APTKSYVVCH LKHKGNEESD FSAQQLNGRA  180
ISSMDLDSGL HQPEHNNSFP ETWSEAVGNS SISLDDLDSN LHQPEHENLF PEPSIQAVEN  240
SSISLVDLQS DLRQPEPENS CPENWQTPTI ETLHGQTSSS QNKNAMEETG QTLAIELPHG  300
CREVPPEEKK SFDGNESNCS NVFPPKRMDP LEEPATVRIY SKGEKMRFLE VKKQELAAKN  360
MKPNCPLLDN SATKAKHDQA SRFHKGSILE ENWLTSTKKS LDGVLKGKKG FTESELDGWE  420
IVSAKQTEHP KKAGNAGISC KYKDPRLEKL KMPEFSAREI SNQKVHLWLN QKLDQRGESN  480
EHREETEPAR EISISATPSA GSTSNHAKIS ANSSTFKITT RFMPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-25916714171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066077.10.0PREDICTED: protein NTM1-like 9 isoform X1
TrEMBLA0A059BDD30.0A0A059BDD3_EUCGR; Uncharacterized protein
STRINGXP_010066077.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2067726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-39NAC 014