PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01548.1.p
Common NameEUGRSUZ_G01548, LOC104453257
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 800aa    MW: 90345.5 Da    PI: 6.515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01548.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.81.5e-34111392128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka......eekewyfFskrdkkyatgkrknratksgyWk 84 
                       p+G+ F+Ptdeelv++yLk kv+g +     +i+evdi+k+ePw+Lp+    +  +      + +ew+fF  +        r +r+t  g+Wk
  Eucgr.G01548.1.p  11 PVGYGFRPTDEELVDYYLKLKVQGFTGVN-CIIPEVDICKWEPWELPNifeeQ--SiippddKAQEWWFFYLQTP------RIQRSTPLGFWK 94 
                       79**********************99433.57***************645550..14555445669988888655......7899******** PP

               NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +tg d+++++  +++++g+kktLvfykg+ ++g  t+Wv+hey+l
  Eucgr.G01548.1.p  95 KTGVDRTIKTGdRNRAIGTKKTLVFYKGHGKRGIGTKWVIHEYHL 139
                       ********99867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-398164IPR003441NAC domain
PROSITE profilePS5100541.09410164IPR003441NAC domain
PfamPF023653.8E-2011139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MEPVIIPRNP PVGYGFRPTD EELVDYYLKL KVQGFTGVNC IIPEVDICKW EPWELPNIFE  60
EQSIIPPDDK AQEWWFFYLQ TPRIQRSTPL GFWKKTGVDR TIKTGDRNRA IGTKKTLVFY  120
KGHGKRGIGT KWVIHEYHLL TNNLNELFPH APTKSYVVCH LKHKGNEESD FSALQLNGGG  180
ISLMDLDSGL HQPEQNNSFP EPWSEAVGNS SISLADLDSN LHQPEHENLF LEPWIQAVEN  240
PSISLVDLQS DLRQPEPENS CPESWILVDS ATEPSLQQDN QVQVITSILP QTSFQSEIDS  300
QTDLHVRNFG SPSFANLPWD DESNQLQVGY IDRDQIQTQY GPKCSPDDEH AVLRKSQRAK  360
MIKSLHGVVS LDEKKGFIEH KFNGLHISSQ KHMEPPKKPE IARTYSTDEE SRVEKVEKLE  420
LAARNIKPEC VTLDELEAKA KYGQTSSSRN AHAKVENWQT PTIETLHGQT SSSQNKNAME  480
ETGQTLAIEL PHGCREVPPE EKKSFDRNES NCSNVFPPKR MDPLEEPATV RIYSKGEKMR  540
FLEVKKQELA AKNIKPNCAL LDDSATKAKS HNEHVAVVDN VRIGTVEPLN GVAPLHKKKG  600
FDKNKFDSLH VSSTKHTELL EKLRKEDLAA RNSKSVYIPL DESIAIAKHD QASRFHKGSI  660
LEENWLTSTN KSLDGVLKGK KGCTESELDE WEIVSAKQTE HPKKAGNAGI SCKYKDPRLE  720
KLKMPEFSAR EISNQKVHLW LNQKLDQSHR GESNEHREET EPAREISISA TPSAGSTSNH  780
AKISANSSTF KITTRFMPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-24916714171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01548.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066080.10.0PREDICTED: protein NTM1-like 9 isoform X1
TrEMBLA0A059BCM60.0A0A059BCM6_EUCGR; Uncharacterized protein
STRINGXP_010066080.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2067726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.13e-39NAC 014