PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01458.1.p | ||||||||
Common Name | EUGRSUZ_G01458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 478aa MW: 53938.6 Da PI: 7.8973 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.8e-18 | 120 | 209 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k ++ps+v+ +l lpkkf++ h +++++t+tledes++ +e k+ + + + l++GW++F a++L+egD +vF+l++ ++f +v Eucgr.G01458.1.p 120 VKHMLPSHVTGGFWLGLPKKFCDLHL--PQQDVTITLEDESSKGYETKY--LGAKMG--LSGGWRGFSIAHNLQEGDALVFQLVKPTRF--KV 204 58899*****************8885..35899****************..777755..9**********************9986777..99 PP EEE-S CS B3 95 kvfrk 99 ++r+ Eucgr.G01458.1.p 205 YIVRR 209 98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 111 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-23 | 112 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-25 | 117 | 208 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 119 | 210 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-20 | 119 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-16 | 120 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 9.5E-8 | 356 | 464 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MAIRQDEKPR LLPPPSKVQR GTALKRKEKL LSGRPLGVQR TSCKQQGTSL KRKEKLLCRK 60 PLGLQGTSNK QVICCGLPKL ESPKRERAAD DEYGTASAND ALDRAKRIQS TLSPEYPVMV 120 KHMLPSHVTG GFWLGLPKKF CDLHLPQQDV TITLEDESSK GYETKYLGAK MGLSGGWRGF 180 SIAHNLQEGD ALVFQLVKPT RFKVYIVRRS NFDDVDGALG LLSLDHCLKT GDSENARKTC 240 KISDDDYWKP LTTEDPPQIS QNDNLRACNV LALPVTEQAK SDPGDPVSEV LDGIRFSENT 300 VDFKDVRSIE NFEIIANDLV IDSELSNHFR LKYYELCRSQ KSYLHGRLLE GLNYKLAAGI 360 ISETVNLADA IRASRIVTSM KEFDIWNKTL KAFQDMGMEV GFLRARLERL LELAMRSKRY 420 REAESDRARA EEERCRLEVK LAEVREVISR LDDEIESLRK GSDDLEMTFE EVASAPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01458.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068473.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A059BDN9 | 0.0 | A0A059BDN9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068473.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16718 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01458.1.p |