PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01455.1.p
Common NameEUGRSUZ_G01455
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 285aa    MW: 33311.1 Da    PI: 11.263
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01455.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.2e-18136216187
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k +++s+v+   +l+lp +f+ +h  +++++ t+tl de+g+++e k+ ++k++    l++GW++F  a++L +gD +vF+l++ 
  Eucgr.G01455.1.p 136 FIKPMLQSHVTGGFWLSLPYNFCHKH--IPHRDDTVTLVDEDGEEFETKYLIDKNG----LSGGWRGFSIAHDLVDGDALVFQLIQP 216
                       89*********************777..456778****************889998....***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-18127221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-23129225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.12E-25134214No hitNo description
SMARTSM010199.6E-19136227IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588136227IPR003340B3 DNA binding domain
PfamPF023621.1E-15136216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGKVVGSKRD YEECRRQRME ENKKRRMEEL RLNKLAAALT AASPKSTPVK QSKMRTPRRQ  60
PETYSEPVRR SSRTANKPAP NYKEVIEINP SERVRSRSYS RRDLLNRVYA SDTIRTYAIE  120
RAEQLQSSLD AELPSFIKPM LQSHVTGGFW LSLPYNFCHK HIPHRDDTVT LVDEDGEEFE  180
TKYLIDKNGL SGGWRGFSIA HDLVDGDALV FQLIQPLTFK CVPFGRYTSS EPMNQRRRKR  240
KSLKGRTRRK QRTVERRRRK QKTVERRRKP KSGKRRKGKQ MSNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237261RKRKSLKGRTRRKQRTVERRRRKQK
2245251RTRRKQR
3255268RRRRKQKTVERRRK
4256269RRRKQKTVERRRKP
5257267RRKQKTVERRR
6257276RRKQKTVERRRKPKSGKRRK
7265276RRRKPKSGKRRK
8269275PKSGKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01455.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067929.11e-163PREDICTED: B3 domain-containing protein Os06g0194400 isoform X2
SwissprotQ1G3M32e-71Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A059BC430.0A0A059BC43_EUCGR; Uncharacterized protein
STRINGXP_010067929.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-63B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]