PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01324.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-PHD
Protein Properties Length: 1026aa    MW: 112657 Da    PI: 4.7005
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01324.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.62.1e-13844891552
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                       +++ +  +++L e+F++n+yp +++ e+LA +lg+t++qVk WF N R
  Eucgr.G01324.1.p 844 RRLGEAVTQRLHEAFKENQYPERAASEKLAGELGITTQQVKKWFENAR 891
                       556677899*************************************99 PP
2PHD38.72.3e-13488542150
                       SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
               PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                       +C+ Cg+   +++++++lCdg C++ fH++Cl+++l  e++p     wlC+ C++
  Eucgr.G01324.1.p 488 FCAKCGSkdLTADNDIILCDGaCDRGFHQYCLEPPLHAEDVPPAdqGWLCPGCDC 542
                       699***977778********66***************999998899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.52E-14478546IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-13485542IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.119486543IPR019787Zinc finger, PHD-finger
PfamPF006284.8E-11488542IPR019787Zinc finger, PHD-finger
CDDcd155041.62E-27488540No hitNo description
SMARTSM002491.6E-8488541IPR001965Zinc finger, PHD-type
PROSITE patternPS013590489540IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.609.7E-13827891IPR009057Homeodomain-like
SuperFamilySSF466892.57E-11833895IPR009057Homeodomain-like
SMARTSM003893.2E-10836901IPR001356Homeobox domain
PROSITE profilePS5007113.021837897IPR001356Homeobox domain
CDDcd000861.74E-10840891No hitNo description
PfamPF000467.1E-11845891IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MAEDKQMEYV SAQQITKSSE ANGLEESILE KRQGLVSEGI KIGLVDMGNQ SCADVVDDGA  60
HVSKSFEINR MGMPSKDPSQ VKNLAISPES VIDKTKNTEI ASAGEDIGES IHKFNSQCID  120
GAHSLQEKRC ELGVEGSTIV PSSHAFSENL VTQEDNNGAA HQFGSRYSVG QEEKRHTLGI  180
KETGSPLCSD TAEQLRKPFC ENSTFEHRML LSPNIRMSDE AASVLCLKHL QLHETHCGSG  240
SIRNQLPVPD HGENVSVQVS TIVSDKIETE STGLRSNVEI GSSVLEHIEF NGDSVVNEQL  300
QVHMEELTNS SSYDPSELQQ ENLTGNSEGS GHRDRRTSKR LKERNTWRSS LGSDRVLRSR  360
SKDKSIAESK DDVVNPGEEV KRKQRKKRQA REGIADEYSR IRKNLSYMLN RIGYERNLID  420
AYSGEGWKGL SLEKIKPEKE LQRATSEIVK RKLRIRDLFQ QLDSLCAEGK LPEALFDSEG  480
MIDSEDIFCA KCGSKDLTAD NDIILCDGAC DRGFHQYCLE PPLHAEDVPP ADQGWLCPGC  540
DCRVDCIDLL NESQGANLSI ADSWEKVFPE VATADKTEDP NLGLPSDDSD DADYDPDVPQ  600
VDEDLGDDSS SEDQGNDSSS DESGCNVASD KSGASLKYDR IGLSSDDSED DDFDPDAPDS  660
EKVKEEGSSS DFTSDSEDLA AAVGGVADEV NSYRGGGRRS SRNSFEKKEI VKGELQSLLE  720
GDADKDVSVC MPGKRHVERL DYKKLYDEEF GGKSSDSSDD EDWSDTAEPS KRKRGADKVA  780
LASNNGNFTS GEIIEHNKNG NEQTPRRRTN NRMDSPSTNS ITAIPRRSSS APESTGRKAR  840
STYRRLGEAV TQRLHEAFKE NQYPERAASE KLAGELGITT QQVKKWFENA RWSFNHPSGS  900
KVRVSAKDMI MENPRPQLST GPHSSAPEMI TDDAPSNGIP NAEPSGVASM PECIDKDVKN  960
SGVGGPQMNR KSYDSSHLGK RKEKADNVVF GPDQVNQTQA LQDDSAKASE PQTSSRRHTR  1020
SKSKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01324.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065948.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
RefseqXP_010065949.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
RefseqXP_010065951.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
TrEMBLA0A059BBR60.0A0A059BBR6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010065948.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-94Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain