PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01246.1.p | ||||||||
Common Name | EUGRSUZ_G01246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 111aa MW: 12549.5 Da PI: 8.2322 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8.4e-14 | 9 | 96 | 14 | 94 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE............EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy.........rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++l+lp f+++h +++ ++ + sg+sW vkl +y ++ r+++t+GW F+++ +++ g +vF+l++r++ + v Eucgr.G01246.1.p 9 NCLSLPVGFIKQHiQEN--KG--MATLRFSGESWPVKLlSYtqtrkilsgYTHDTRVFFTTGWTAFARETHMRMGNLCVFELIDRDDVVFQV 96 459*******9994333..33..666778*********544888888877677777***************************987773444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.406 | 1 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.0E-14 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 6 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.28E-12 | 6 | 100 | No hit | No description |
Pfam | PF02362 | 1.3E-11 | 9 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MVIPPSYMNC LSLPVGFIKQ HIQENKGMAT LRFSGESWPV KLLSYTQTRK ILSGYTHDTR 60 VFFTTGWTAF ARETHMRMGN LCVFELIDRD DVVFQVSNFS SAGKEPIPID * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01246.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065905.2 | 3e-66 | PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X1 | ||||
Refseq | XP_018733250.1 | 2e-66 | PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X2 | ||||
TrEMBL | A0A059BBX3 | 5e-78 | A0A059BBX3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065905.1 | 3e-66 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 6e-11 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01246.1.p |