PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01245.1.p | ||||||||
Common Name | EUGRSUZ_G01245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 340aa MW: 39011.9 Da PI: 8.9392 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.8e-15 | 34 | 124 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 fk+ sd+l+sg l +pk+f++++g++ s + l+ + g +W+++l +k+ + + l kGW++F + + g +vFk++g+s+f Eucgr.G01245.1.p 34 FKII-LSDTLESGKLGIPKSFLRRCGKD--LSNSVLLQVPGGSTWTIEL--EKCNNDmVSLWKGWQDFMEYYSIGHGHLIVFKYIGNSTF--G 119 4444.59******************977..8889***************..55555449999************************9888..6 PP EEEE- CS B3 94 vkvfr 98 + +f+ Eucgr.G01245.1.p 120 IIIFD 124 66666 PP | |||||||
2 | B3 | 66.2 | 4.9e-21 | 231 | 328 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv++++++lk+++l++p++f+ +h ++ k++ + sg rsW +kl k++ + ++++GW F+++n L +gD+++F+l++r+ Eucgr.G01245.1.p 231 FFKVMMQPSYLKHHILYVPRRFIMQHiRKI----KEIAILRHSGryldRSWPLKLLRYKQDHKAFFSGGWPAFARENCLHVGDVCMFELIDRE 319 9**********************9995433....367788888889*********778888889***************************** PP EE..EEEEE CS B3 89 efelvvkvf 97 +f + v++f Eucgr.G01245.1.p 320 DFVFEVSIF 328 **8888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-21 | 29 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 30 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.89E-17 | 31 | 124 | No hit | No description |
PROSITE profile | PS50863 | 13.056 | 32 | 126 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-15 | 33 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-13 | 34 | 124 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-22 | 223 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-22 | 225 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-16 | 231 | 331 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.888 | 231 | 331 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.80E-22 | 231 | 329 | No hit | No description |
Pfam | PF02362 | 8.2E-19 | 231 | 328 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MASCSRRRRR RRREDGAVEP EVVAGRCRES RCFFKIILSD TLESGKLGIP KSFLRRCGKD 60 LSNSVLLQVP GGSTWTIELE KCNNDMVSLW KGWQDFMEYY SIGHGHLIVF KYIGNSTFGI 120 IIFDKSTSEI DYSLSSGKKT DLGSKFPSPK TEDVVEAEDP EELITRRKMR VESHLPYSQL 180 SPIYSPRGSK DGIRRSRCKM NHSEPFFGGP TCIGPLSGFE LASEFESEYP FFKVMMQPSY 240 LKHHILYVPR RFIMQHIRKI KEIAILRHSG RYLDRSWPLK LLRYKQDHKA FFSGGWPAFA 300 RENCLHVGDV CMFELIDRED FVFEVSIFCS AGTGPILTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-14 | 222 | 328 | 39 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-14 | 222 | 328 | 39 | 140 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | RRRRRRRR |
2 | 6 | 12 | RRRRRRR |
3 | 6 | 13 | RRRRRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01245.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065905.2 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X1 | ||||
Refseq | XP_018733251.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X3 | ||||
TrEMBL | A0A059BBK8 | 0.0 | A0A059BBK8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065905.1 | 1e-144 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01245.1.p |