PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01242.1.p
Common NameEUGRSUZ_G01242
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 208aa    MW: 23350.5 Da    PI: 8.6113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01242.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-16331252100
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+   s++l+sg l +pk+f++++g++   s  + l+ + g  W+++l  + + +  + l kGW+eF +   +  g  +vFk++g+s+f  +
  Eucgr.G01242.1.p  33 FKII-LSNALESGKLGIPKNFIRRCGKD--LSSSVLLKVPGGSAWTIEL--ETCNNDlVSLWKGWREFMEHYSIGHGHLIVFKYKGNSTF--H 118
                       4444.589999999***********977..7778***************..66666668999************************9999..* PP

                       EEEE-SS CS
                B3  94 vkvfrks 100
                       v +f+ks
  Eucgr.G01242.1.p 119 VIIFDKS 125
                       *999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2229125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-2230125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1730123No hitNo description
PROSITE profilePS5086313.63431125IPR003340B3 DNA binding domain
SMARTSM010191.3E-1432125IPR003340B3 DNA binding domain
PfamPF023623.0E-1333124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MASRNGRRRR RREDGAVERE VATGPRLGSR CFFKIILSNA LESGKLGIPK NFIRRCGKDL  60
SSSVLLKVPG GSAWTIELET CNNDLVSLWK GWREFMEHYS IGHGHLIVFK YKGNSTFHVI  120
IFDKSASEID YSSSSSKILY FGSEFPSPKS EDVLEAEDLQ DSTPCQRMRV EPHLPYSQLS  180
LSYPPQGLEG VTLHFLSHVS SYITLFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311RNGRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01242.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065901.21e-131PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X2
RefseqXP_018733248.11e-131PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X4
RefseqXP_018733249.11e-132PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X5
TrEMBLA0A059BCJ91e-151A0A059BCJ9_EUCGR; Uncharacterized protein
STRINGXP_010068368.17e-93(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-18B3 family protein