PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01241.1.p | ||||||||
Common Name | EUGRSUZ_G01241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 16646.1 Da PI: 10.5618 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.4e-14 | 26 | 114 | 12 | 98 |
HT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 12 ks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 k+ + l++p kf+++h ++ +k++ s rsW vkli + + +++GW F+++ +L +g ++ F+l++r+e+ ++v++ Eucgr.G01241.1.p 26 KQvATLRVPVKFVKQHLHE---NKQVATLRYSDRSWPVKLIRslgqAR---GapaLAFSTGWCVFARETDLHAGNVCSFELIDRDETVFKVSI 112 2246799******999543...23577777899*******77654333...24669999***********************99888889998 PP E- CS B3 97 fr 98 +r Eucgr.G01241.1.p 113 LR 114 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-16 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.63 | 16 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.7E-7 | 17 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 18 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-11 | 28 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.21E-13 | 31 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MTSKFQHAHV QSVPVKFVKQ HLHENKQVAT LRVPVKFVKQ HLHENKQVAT LRYSDRSWPV 60 KLIRSLGQAR GAPALAFSTG WCVFARETDL HAGNVCSFEL IDRDETVFKV SILRGAGNDL 120 IHVNGDEHRK YYLRPLQHRN EIRGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01241.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018733252.1 | 2e-67 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | A0A059BD55 | 1e-104 | A0A059BD55_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065901.1 | 1e-63 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01241.1.p |