PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01240.1.p
Common NameEUGRSUZ_G01240
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 494aa    MW: 56483.4 Da    PI: 9.7976
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-1538125799
                       .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        s +  sg l +pk+f+++ g++   s  + l+ + + +W+++l  + + ++++l+kGW+eF +   +  g f+vFk++++s+f  +v +f+k
  Eucgr.G01240.1.p  38 LSGAIDSGKLGIPKNFLRRRGKD--LSNSVLLKVPGSSTWTIELE-KHNHDMVLLGKGWREFMEHYSIGHGHFIVFKYKENSTF--RVIIFDK 125
                       466778899********999977..8889***************4.445557**************************998999..9999987 PP
2B3444.1e-14252344196
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr......yvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+kv  +s+++k   l++p  f+++h+++k++   +tl++  +rsW+v +   ++   +       ++++GW  F+++ +L  gD+++Fkl++
  Eucgr.G01240.1.p 252 FIKVIRRSYMSK---LSIPGGFFKQHKLEKQR---VTLRH-ANRSWSVSFGRsNR---HvrgalcLFFSAGWDAFARETHLHIGDVCMFKLID 334
                       566665666655...68*********998654...88777.88*******33233...23358999999***********************9 PP

                       SSEE..EEEE CS
                B3  87 rsefelvvkv 96 
                       r++  + v+v
  Eucgr.G01240.1.p 335 RDDIVFEVSV 344
                       8877666666 PP
3B352.77.7e-17389483198
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       ffkv ++ +++k+  +++p++f ++h ++    +k++     s rsW vkl +y  +k ++++++ GWkeF+++ +L++g +++F+l+++++ 
  Eucgr.G01240.1.p 389 FFKVVIRQYHMKH--MYVPNQFSQQHiQE----NKEMATLRFSDRSWPVKLlSYtHNKYQGVYFSVGWKEFARETHLCVGNICMFELIDSDDV 475
                       89***9*999999..7*******999433....34566677788*******555877778899*************************98888 PP

                       ..EEEEE- CS
                B3  91 elvvkvfr 98 
                        + v+vf+
  Eucgr.G01240.1.p 476 VFQVSVFS 483
                       78888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-2130126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2030126IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-1531124No hitNo description
PROSITE profilePS5086313.46532126IPR003340B3 DNA binding domain
SMARTSM010195.4E-1733126IPR003340B3 DNA binding domain
PfamPF023621.2E-1239125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-17244345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-14245344IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124249348IPR003340B3 DNA binding domain
CDDcd100178.34E-13250346No hitNo description
SMARTSM010192.3E-7252348IPR003340B3 DNA binding domain
PfamPF023621.4E-11252342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-20381484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-17383483IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.251387485IPR003340B3 DNA binding domain
SMARTSM010195.2E-9389485IPR003340B3 DNA binding domain
PfamPF023626.7E-15389483IPR003340B3 DNA binding domain
CDDcd100172.71E-11389483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MASCSGRRRR RREGGAAERE AAAGPPRRGS RCFFKFILSG AIDSGKLGIP KNFLRRRGKD  60
LSNSVLLKVP GSSTWTIELE KHNHDMVLLG KGWREFMEHY SIGHGHFIVF KYKENSTFRV  120
IIFDKSASEI DYSSSRGEPS YLGSELPSPE AEDVVETDRL EDVKPRQRMR MEPHLPCSQL  180
SPSFSPRGSE VSMDTDPEEP HMAQAQAGLT ERSKQPTCGA SHSELDFHGP MLPRPLTTPE  240
LTRKINSEYP FFIKVIRRSY MSKLSIPGGF FKQHKLEKQR VTLRHANRSW SVSFGRSNRH  300
VRGALCLFFS AGWDAFARET HLHIGDVCMF KLIDRDDIVF EVSVLSVLRG NKLSKRKLNH  360
HELVTRGPRP PKPPTTPEVA SEFESEHPFF KVVIRQYHMK HMYVPNQFSQ QHIQENKEMA  420
TLRFSDRSWP VKLLSYTHNK YQGVYFSVGW KEFARETHLC VGNICMFELI DSDDVVFQVS  480
VFSSAGKNLI HID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733256.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059BC500.0A0A059BC50_EUCGR; Uncharacterized protein
STRINGXP_010065902.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-26B3 family protein