PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01238.2.p | ||||||||
Common Name | EUGRSUZ_G01238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 485aa MW: 55172.9 Da PI: 9.1741 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 52 | 116 | 32 | 99 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s + l+ ++g +W+++l +++ ++++l+kGW+eF + + g f+vFk++++s+f +v +f+k Eucgr.G01238.2.p 52 LSNSVLLKVPDGSTWTIELE-KRNHDMVLLGKGWREFMEHYSIGHGHFIVFKYKENSTF--RVIIFDK 116 677899*************5.666678**************************998999..9999987 PP | |||||||
2 | B3 | 33.5 | 7.3e-11 | 243 | 336 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFkldgr 87 f+kv +s+++k l++p f+++h+++k++ tl++ +rsW+v+l + ++ ++++G F+++ +L +g +++Fkl++r Eucgr.G01238.2.p 243 FIKVIRRSYMSK---LSIPGGFIKQHKLEKQR---ATLRH-ANRSWSVRLGG--SNRHvrgalcLFFSAGRDAFARETHLHVGHVCMFKLIDR 326 566665666655...68*********999755...66666.78*******33..33223357988999***********************98 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 ++ + v+++ Eucgr.G01238.2.p 327 DDIVFEVSIL 336 8876677665 PP | |||||||
3 | B3 | 52.1 | 1.2e-16 | 380 | 474 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv ++ +++k+ +++p++f ++h ++ +k++ s rsW vkl +y +k ++++++ GWkeF+++ +L++g +++F+l+++++ Eucgr.G01238.2.p 380 FFKVVIQQYHMKQ--MYVPNQFSQQHiQE----NKEMATLRFSDRSWLVKLlSYtHNKYQGVYFSVGWKEFARETHLCVGNICMFELIDSDDV 466 8999999999987..7*******999433....34566677788*******555877778899*************************98888 PP ..EEEEE- CS B3 91 elvvkvfr 98 + v+vf+ Eucgr.G01238.2.p 467 VFQVSVFS 474 78898887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.88E-12 | 31 | 115 | No hit | No description |
SuperFamily | SSF101936 | 7.26E-16 | 31 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-10 | 33 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-16 | 47 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-10 | 52 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 53 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-14 | 235 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-11 | 236 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.895 | 240 | 339 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-10 | 241 | 337 | No hit | No description |
SMART | SM01019 | 0.0013 | 243 | 339 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-9 | 243 | 335 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 372 | 475 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 374 | 474 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.152 | 378 | 476 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.93E-11 | 380 | 474 | No hit | No description |
SMART | SM01019 | 1.3E-8 | 380 | 476 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 380 | 474 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MASCSGHRRR RREGGAVERE AVTGPPRRGS RCFFKFILSG ALDSGSSCGK DLSNSVLLKV 60 PDGSTWTIEL EKRNHDMVLL GKGWREFMEH YSIGHGHFIV FKYKENSTFR VIIFDKSASE 120 MDYSSSRGET SYLGSELPSP EAEDVVETDR LEDVKPRQRM RMEPHLPCSQ LSPSFSPRGS 180 EVSMDTDPEE PHLAQAQAGL TERSKQPTCG ASHSELDFHG PMLPRPLTTP ELTRKINSKY 240 PFFIKVIRRS YMSKLSIPGG FIKQHKLEKQ RATLRHANRS WSVRLGGSNR HVRGALCLFF 300 SAGRDAFARE THLHVGHVCM FKLIDRDDIV FEVSILSVLR GNKLSKRRVN HHELGIRGPT 360 PPKPPTTPEV ASEFESEHPF FKVVIQQYHM KQMYVPNQFS QQHIQENKEM ATLRFSDRSW 420 LVKLLSYTHN KYQGVYFSVG WKEFARETHL CVGNICMFEL IDSDDVVFQV SVFSSAGKDL 480 IHID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01238.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018733253.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A059BBK3 | 0.0 | A0A059BBK3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065902.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01238.2.p |