PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01238.1.p
Common NameEUGRSUZ_G01238
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 508aa    MW: 57623.6 Da    PI: 9.1965
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.3e-13521163299
                       --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        s  + l+ ++g +W+++l  +++ ++++l+kGW+eF +   +  g f+vFk++++s+f  +v +f+k
  Eucgr.G01238.1.p  52 LSNSVLLKVPDGSTWTIELE-KRNHDMVLLGKGWREFMEHYSIGHGHFIVFKYKENSTF--RVIIFDK 116
                       677899*************5.666678**************************998999..9999987 PP
2B333.47.9e-11243336197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+kv  +s+++k   l++p  f+++h+++k++    tl++  +rsW+v+l    + ++       ++++G   F+++ +L +g +++Fkl++r
  Eucgr.G01238.1.p 243 FIKVIRRSYMSK---LSIPGGFIKQHKLEKQR---ATLRH-ANRSWSVRLGG--SNRHvrgalcLFFSAGRDAFARETHLHVGHVCMFKLIDR 326
                       566665666655...68*********999755...66666.78*******33..33223357988999***********************98 PP

                       SEE..EEEEE CS
                B3  88 sefelvvkvf 97 
                       ++  + v+++
  Eucgr.G01238.1.p 327 DDIVFEVSIL 336
                       8876677665 PP
3B3521.3e-16380474198
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       ffkv ++ +++k+  +++p++f ++h ++    +k++     s rsW vkl +y  +k ++++++ GWkeF+++ +L++g +++F+l+++++ 
  Eucgr.G01238.1.p 380 FFKVVIQQYHMKQ--MYVPNQFSQQHiQE----NKEMATLRFSDRSWLVKLlSYtHNKYQGVYFSVGWKEFARETHLCVGNICMFELIDSDDV 466
                       8999999999987..7*******999433....34566677788*******555877778899*************************98888 PP

                       ..EEEEE- CS
                B3  91 elvvkvfr 98 
                        + v+vf+
  Eucgr.G01238.1.p 467 VFQVSVFS 474
                       78888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-1631124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1231115No hitNo description
SMARTSM010191.6E-1033117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1647117IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1052116IPR003340B3 DNA binding domain
PROSITE profilePS5086311.89953117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-14235336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-11236336IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.895240339IPR003340B3 DNA binding domain
CDDcd100178.32E-11241337No hitNo description
SMARTSM010190.0013243339IPR003340B3 DNA binding domain
PfamPF023629.0E-9243335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19372475IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17374474IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152378476IPR003340B3 DNA binding domain
CDDcd100171.46E-11380474No hitNo description
SMARTSM010191.3E-8380476IPR003340B3 DNA binding domain
PfamPF023621.6E-14380474IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MASCSGHRRR RREGGAVERE AVTGPPRRGS RCFFKFILSG ALDSGSSCGK DLSNSVLLKV  60
PDGSTWTIEL EKRNHDMVLL GKGWREFMEH YSIGHGHFIV FKYKENSTFR VIIFDKSASE  120
MDYSSSRGET SYLGSELPSP EAEDVVETDR LEDVKPRQRM RMEPHLPCSQ LSPSFSPRGS  180
EVSMDTDPEE PHLAQAQAGL TERSKQPTCG ASHSELDFHG PMLPRPLTTP ELTRKINSKY  240
PFFIKVIRRS YMSKLSIPGG FIKQHKLEKQ RATLRHANRS WSVRLGGSNR HVRGALCLFF  300
SAGRDAFARE THLHVGHVCM FKLIDRDDIV FEVSILSVLR GNKLSKRRVN HHELGIRGPT  360
PPKPPTTPEV ASEFESEHPF FKVVIQQYHM KQMYVPNQFS QQHIQENKEM ATLRFSDRSW  420
LVKLLSYTHN KYQGVYFSVG WKEFARETHL CVGNICMFEL IDSDDVVFQV SVFSSAGGTE  480
KSTCRASRSE LDFHGPALSR PLTLPEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01238.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733253.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A059BCJ60.0A0A059BCJ6_EUCGR; Uncharacterized protein
STRINGXP_010065904.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-21B3 family protein