PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G01082.1.p

Common Name

EUGRSUZ_G01082

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 230aa MW: 26249.7 Da PI: 8.1966

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G01082.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.4	1.4e-32	5	133	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 ++GfrF Pt+eel++ yL+ kv g + vi+e+ d y ++PwdLp ++ ++ +wyfF+++ +++++r +r+t+sg Wk t Eucgr.G01082.1.p 5 QVGFRFLPTEEELLNGYLTSKVLGYADGC--VIPELdDFYAWDPWDLPGlyqqisNIPSDGLDWYFFCPSPYLAQNSERVKRQTRSGKWKITC 95 68*********************9777..8999989******53554444444666*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ e++++ ++ l+g+k++Lvf kgra kt Wvmhey+l Eucgr.G01082.1.p 96 QKDEIKARdTKVLIGTKRILVFNKGRA----KTGWVMHEYHL 133 **9956667******8887....678*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.349	4	157	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-36	4	157	IPR003441	NAC domain
Pfam	PF02365	8.4E-22	6	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MERFQVGFRF LPTEEELLNG YLTSKVLGYA DGCVIPELDD FYAWDPWDLP GLYQQISNIP 60 SDGLDWYFFC PSPYLAQNSE RVKRQTRSGK WKITCQKDEI KARDTKVLIG TKRILVFNKG 120 RAKTGWVMHE YHLNPRLLHG YSSTFQIPYI LCRLKRKPSE SLDISPSFEG RSSVTYDNPV 180 ASQRELTEDS NQEVTAAPLV RRGPGTAHRA DCFNHSAKQI DNSVIPNLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-19	7	161	20	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-19	7	161	20	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-19	7	161	20	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-19	7	161	20	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	7	161	23	172	NAC domain-containing protein 19
3swm_B	2e-19	7	161	23	172	NAC domain-containing protein 19
3swm_C	2e-19	7	161	23	172	NAC domain-containing protein 19
3swm_D	2e-19	7	161	23	172	NAC domain-containing protein 19
3swp_A	2e-19	7	161	23	172	NAC domain-containing protein 19
3swp_B	2e-19	7	161	23	172	NAC domain-containing protein 19
3swp_C	2e-19	7	161	23	172	NAC domain-containing protein 19
3swp_D	2e-19	7	161	23	172	NAC domain-containing protein 19
4dul_A	1e-19	7	161	20	169	NAC domain-containing protein 19
4dul_B	1e-19	7	161	20	169	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G01082.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026029.1	6e-84	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059BCS2	1e-172	A0A059BCS2_EUCGR; Uncharacterized protein
STRING	XP_010068322.1	1e-138	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	9e-38	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Eucgr.G01082.1.p