PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01081.1.p
Common NameEUGRSUZ_G01081
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 174aa    MW: 20435.7 Da    PI: 9.2773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.91.1e-3251332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                       ++GfrF P++eel++ yL  kv g  + +  +i+e+ d y  +Pw+Lp+      ++ ++  +wyfF+++   +++++r +r+t+sg Wk t 
  Eucgr.G01081.1.p   5 QVGFRFLPSEEELLQGYLMSKVLGYANGC--IIPELeDFYAKDPWELPElyqhisNIPSDGWDWYFFCPSPYLAQNSERIKRQTTSGKWKITC 95 
                       68************************888..788888***********6455544444455699***************************** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ e++++ +++l+g+k++Lvfykgr     kt Wvmhey+l
  Eucgr.G01081.1.p  96 QKDEIKARdTKALIGTKRILVFYKGRV----KTGWVMHEYHL 133
                       ******9966777**********7664....789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-364157IPR003441NAC domain
PROSITE profilePS5100537.6014157IPR003441NAC domain
PfamPF023655.3E-226133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MERFQVGFRF LPSEEELLQG YLMSKVLGYA NGCIIPELED FYAKDPWELP ELYQHISNIP  60
SDGWDWYFFC PSPYLAQNSE RIKRQTTSGK WKITCQKDEI KARDTKALIG TKRILVFYKG  120
RVKTGWVMHE YHLNPKLLNG YSSTFQIPYI LCRLKRKPSE SWIFRPVLKE VLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-20716123172NAC domain-containing protein 19
3swm_B3e-20716123172NAC domain-containing protein 19
3swm_C3e-20716123172NAC domain-containing protein 19
3swm_D3e-20716123172NAC domain-containing protein 19
3swp_A3e-20716123172NAC domain-containing protein 19
3swp_B3e-20716123172NAC domain-containing protein 19
3swp_C3e-20716123172NAC domain-containing protein 19
3swp_D3e-20716123172NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01081.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026029.11e-67PREDICTED: protein NTM1-like 9
TrEMBLA0A059BBR91e-126A0A059BBR9_EUCGR; Uncharacterized protein
STRINGXP_010068322.11e-105(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-33NAC transcription factor-like 9