PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.G01073.1.p | ||||||||
Common Name | EUGRSUZ_G01073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 17976.5 Da PI: 7.9789 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.2 | 6.2e-27 | 9 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+G+rF+Pt++elv ++L+kk++g+ ++ vi+e++iy++eP +L + ++ ++ +e++fF++r +k r+t g+Wk+t + Eucgr.G01073.1.p 9 PVGLRFKPTEDELVGHHLTKKLRGEMETI-CVIPELHIYNWEPPELFArynelsSIPSDGSECFFFCPRGRK--------RKTPCGFWKETST 92 89**********************99777.78**************743555555555888*******9885........77999******** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ + e++gl+++Lv++kgr++++++t+ mh y+l Eucgr.G01073.1.p 93 KRVIKAPdSAEEMGLRRSLVYHKGRQRNARRTNLGMHIYNL 133 999999867778*************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-29 | 5 | 138 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.545 | 8 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-18 | 9 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MAESMEAWPV GLRFKPTEDE LVGHHLTKKL RGEMETICVI PELHIYNWEP PELFARYNEL 60 SSIPSDGSEC FFFCPRGRKR KTPCGFWKET STKRVIKAPD SAEEMGLRRS LVYHKGRQRN 120 ARRTNLGMHI YNLNSNVSDS EILDPVLDFS SFASPN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-14 | 2 | 133 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.G01073.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041979.1 | 1e-113 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A059BBR2 | 1e-113 | A0A059BBR2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010041979.1 | 1e-113 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35173 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 3e-29 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.G01073.1.p |