PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01060.1.p
Common NameEUGRSUZ_G01060, LOC104452963
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 593aa    MW: 67286.6 Da    PI: 4.9278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.82.4e-37101381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp G+rFhPtdee v++yL+++v g   +   +i++vdi++++Pw+Lp+        + + + +ew+f++ +       ++ +r+t sgyWk+
  Eucgr.G01060.1.p  10 LPIGYRFHPTDEEFVDHYLTNRVLGIVEDP-CIIPDVDICRWDPWELPQkfhgesiiRPDDKVQEWWFYCLQTP-----QQVKRTTPSGYWKK 96 
                       699*********************998666.57***************6466655443333667******9866.....5789********** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg d++v++ ++ ++g+kktLvf+  + +kg+kt+Wv+hey+l
  Eucgr.G01060.1.p  97 TGPDRNVKA-RDIKIGTKKTLVFHIRQGSKGVKTNWVIHEYHL 138
                       ********9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-435155IPR003441NAC domain
PROSITE profilePS5100541.72410155IPR003441NAC domain
PfamPF023654.6E-2211138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MGAVIIPQNL PIGYRFHPTD EEFVDHYLTN RVLGIVEDPC IIPDVDICRW DPWELPQKFH  60
GESIIRPDDK VQEWWFYCLQ TPQQVKRTTP SGYWKKTGPD RNVKARDIKI GTKKTLVFHI  120
RQGSKGVKTN WVIHEYHLLT KNLNRNYVLC RIKHKGDEKA DNSTMELVYE ASGLENLDSI  180
LRQPDHEDLF TEDLIQAKMM SLMEVSSLPQ NRVQFALPDL VQQPQSALQS LNNRFPSNIH  240
QFMNVKNPFA NFFSSDNGWF TTSDEDEDAG DMFIADLSEE DVSEEDGDAG DMLIADVSEE  300
DEYVRDMLNA DLFDADFFDG DQMQTQYGQT SNQHSEHPVL MENRRTRTID SFHGVVPLEE  360
KKGLVENKFN GSLVTPEKPM EPPVCAASIN YYEEPRFGKF KQETAAKSIK PERVYLDETA  420
AKAKNGQISI VENSKTQTIE SLHDVAPFEQ KEGFMQTKFN SSHVSSTKSI ELLKEPKNPE  480
IPESPRIYID EEPRLEKVKK QGIALRNVKT ECVSLDESAA KAKVEEAPNS PRKTSSREIE  540
HAGENSNSVT ASTRPSTKST KSSTDAPMRN LVNLVIGTLL LIAFTYLHLP SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-28915814171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065766.10.0PREDICTED: NAC domain-containing protein 37
TrEMBLA0A059BC530.0A0A059BC53_EUCGR; Uncharacterized protein
STRINGXP_010065766.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2067726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-42NAC transcription factor-like 9