PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00943.1.p
Common NameEUGRSUZ_G00943
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 118aa    MW: 13538.6 Da    PI: 10.651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00943.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-1459105655
               AP2   6 VrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       Vr+++ +g+++AeI+dp++ g  +r++lg++   e+Aa a+ +a+ k+ g
  Eucgr.G00943.1.p  59 VRRRP-WGKYAAEIKDPKKSG--ARIWLGTYEMLEDAALAYNQAAFKMQG 105
                       99999.**********98765..************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.65153113IPR001471AP2/ERF domain
PRINTSPR003673.2E-55667IPR001471AP2/ERF domain
PfamPF008471.1E-959105IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1859114IPR016177DNA-binding domain
SMARTSM003809.2E-2259115IPR001471AP2/ERF domain
CDDcd000186.55E-2259112No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2559113IPR001471AP2/ERF domain
PRINTSPR003673.2E-57995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MYRQCSSYTG FLVTESWSED LPLSVDDSKH MIVYGALRDA LHSGRRGWRR RRKKRAIEVR  60
RRPWGKYAAE IKDPKKSGAR IWLGTYEMLE DAALAYNQAA FKMQGSKAKL NFSHLIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2459112659ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2459112962ATERF1
3gcc_A7e-2459112962ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14854RRRRKKR
24861RRRRKKRAIEVRRR
34954RRRKKR
45061RRKKRAIEVRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00943.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065366.11e-41PREDICTED: ethylene-responsive transcription factor 13
RefseqXP_010068081.12e-41PREDICTED: ethylene-responsive transcription factor 13
SwissprotQ8L9K11e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A059BCB72e-81A0A059BCB7_EUCGR; Uncharacterized protein
STRINGXP_010065367.12e-41(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]