PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G00890.1.p | ||||||||
Common Name | EUGRSUZ_G00890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 699aa MW: 81136 Da PI: 10.1536 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.6 | 1.4e-15 | 38 | 129 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 fk+ s +l+sg l +pk+f+++hg++ + l+ e g +W vkl +k+ ++ ++l kGW++F + + g +vF+++g+s f + Eucgr.G00890.1.p 38 FKII-LSQTLESGKLGIPKRFLRRHGKD--LLGLVFLKVEGGLTWPVKL--EKSEDGmVWLWKGWRKFMEHYSIGFGHLLVFRYEGDSVF--R 123 4444.488899999***********977..555899999**********..66666669***************************9999..9 PP EEEE-S CS B3 94 vkvfrk 99 v +f+k Eucgr.G00890.1.p 124 VIIFDK 129 999987 PP | |||||||
2 | B3 | 57 | 3.6e-18 | 204 | 292 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ff v +++++ ++ l++p +f+++h +k++ +l+ s rsW+vkl+ +++++ +l++GW++Fv++ gL + D++vF+l++r++ ++ Eucgr.G00890.1.p 204 FFRVVMRPSYIQKY-LCVPCEFFRKHVQKNK---QLVTLRYSDRSWQVKLRSYGHRRMAFLSTGWSSFVRETGLHVSDVCVFELIDRNDIMFR 292 56666777777765.9**********54433...355555699********9********************************998776444 PP | |||||||
3 | B3 | 55.7 | 8.8e-18 | 342 | 435 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv +++++ +++ l++p f+++h +k +k++ s r W+vkl+ ++g+ +l++GW +Fv++ gL+ +D++vF+l++r++ + Eucgr.G00890.1.p 342 FFKVVMRPSYVRKQ-LSIPSGFFRKHVQK---NKQIATLRYSDRLWQVKLRSFEHRGTAFLSNGWCSFVRETGLRLRDVCVFELIDRDDIVFS 430 78888888888886.***********544...23577777899*******9999*******************************99888788 PP EEEE- CS B3 94 vkvfr 98 v +f+ Eucgr.G00890.1.p 431 VYIFK 435 88886 PP | |||||||
4 | B3 | 63 | 4.8e-20 | 457 | 551 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv +++++ +++ l++p +f+++h +k+ k++ + rsW+vkl+ ++g+ +lt+GW +F ++ gL+ gD++vF+l++r++ ++ Eucgr.G00890.1.p 457 FFKVVMRPSYVRKR-LSIPSEFFRKHVKKN---KQVATLSYLDRSWQVKLKSYDHRGMAFLTSGWPSFTRETGLRLGDVCVFELIDRDDIVFR 545 78888888888775.***********6553...3577777788*******99999999***************************99999899 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Eucgr.G00890.1.p 546 VSIFSS 551 999975 PP | |||||||
5 | B3 | 51.1 | 2.5e-16 | 608 | 688 | 15 | 98 |
-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l +p kf++++ g+ +++tl + sgrsWevkl ++++ +l++GW+ Fv++ +L+ gD +vF+l++r++ +++++f+ Eucgr.G00890.1.p 608 KLNIPWKFMKTYiRGD---RRMVTLVN-SGRSWEVKL--HGYKRFqiAFLAAGWSAFVREARLCIGDACVFELIDRDNIVFRISIFS 688 389*********7444...23566665.*********..555555559**************************9887767777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-23 | 31 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-22 | 32 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-16 | 35 | 128 | No hit | No description |
PROSITE profile | PS50863 | 12.957 | 36 | 130 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-15 | 37 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-13 | 38 | 129 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-24 | 196 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-21 | 200 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-14 | 203 | 297 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 203 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 204 | 293 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-14 | 205 | 297 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-21 | 336 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-24 | 336 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.29E-16 | 341 | 435 | No hit | No description |
PROSITE profile | PS50863 | 12.323 | 341 | 437 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-14 | 342 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 342 | 435 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-22 | 451 | 552 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-25 | 451 | 552 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.338 | 456 | 552 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.54E-18 | 456 | 550 | No hit | No description |
SMART | SM01019 | 3.1E-19 | 457 | 552 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-18 | 457 | 551 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 587 | 687 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-19 | 589 | 687 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-13 | 594 | 688 | No hit | No description |
SMART | SM01019 | 6.4E-13 | 596 | 690 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-13 | 602 | 688 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.928 | 609 | 690 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MARRRRHHRR GHRRRRVEDE GAEQEATPAT PPSCPHFFKI ILSQTLESGK LGIPKRFLRR 60 HGKDLLGLVF LKVEGGLTWP VKLEKSEDGM VWLWKGWRKF MEHYSIGFGH LLVFRYEGDS 120 VFRVIIFDKS ASEIDYPSSI GSYGPRPEGE FLSRKEEDVV EIEDSEGFAP RSRPRSKGLS 180 RGFGGRSSLT ALELASKFKS DHPFFRVVMR PSYIQKYLCV PCEFFRKHVQ KNKQLVTLRY 240 SDRSWQVKLR SYGHRRMAFL STGWSSFVRE TGLHVSDVCV FELIDRNDIM FRVSNFNNDG 300 WIEIGQSQCQ ESSSEPSFHG SPCLSPVTAH EKASGFESDH PFFKVVMRPS YVRKQLSIPS 360 GFFRKHVQKN KQIATLRYSD RLWQVKLRSF EHRGTAFLSN GWCSFVRETG LRLRDVCVFE 420 LIDRDDIVFS VYIFKSDGLS PVSAFEKARR LESDHPFFKV VMRPSYVRKR LSIPSEFFRK 480 HVKKNKQVAT LSYLDRSWQV KLKSYDHRGM AFLTSGWPSF TRETGLRLGD VCVFELIDRD 540 DIVFRVSIFS SDGRIEIEQS QFRESSSEPA FHGSPCPSPV ATYEKASKFE SEYPFFHVVI 600 LPNHIYTKLN IPWKFMKTYI RGDRRMVTLV NSGRSWEVKL HGYKRFQIAF LAAGWSAFVR 660 EARLCIGDAC VFELIDRDNI VFRISIFSGV NREVICID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-12 | 327 | 435 | 27 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-12 | 327 | 435 | 27 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 15 | RRHHRRGHRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G00890.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065667.1 | 0.0 | PREDICTED: B3 domain-containing protein REM13 isoform X1 | ||||
TrEMBL | A0A059BBI7 | 0.0 | A0A059BBI7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065667.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18343 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G00890.1.p |