PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00888.2.p
Common NameEUGRSUZ_G00888
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 387aa    MW: 44200 Da    PI: 8.2233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00888.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32e-16301222100
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       fk+   sd+l+sg l +pkkf++++g++   s  + le + + +W++ +  + ++g+++l kGW+eF +   +  g  vvFk++g+s+f  +v
  Eucgr.G00888.2.p  30 FKII-LSDTLESGKLGIPKKFLRRYGKD--LSSLVLLEVLGNSTWSMGVE-KLNDGTVWLWKGWQEFMQHYSIGPGHLVVFKYKGNSTF--RV 116
                       4444.59******************977..777999999**********3.455667****************************9999..99 PP

                       EEE-SS CS
                B3  95 kvfrks 100
                       ++f++s
  Eucgr.G00888.2.p 117 MIFDRS 122
                       999985 PP
2B352.11.2e-16225318198
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       ffkv +++++ +++ + +p+ f+++h +++    k+++    s+r+W vkl  r ++++ + +++GW  Fv+  +L++g ++vF+l++r++  
  Eucgr.G00888.2.p 225 FFKVVIRPSYIEHHVVNVPRWFIRQHiQQI----KEIVTLRHSNRTWPVKL--RTYPSGsMQFSSGWIAFVRGTHLRVGNVCVFELIDRDDIV 311
                       99************************6434....35777777*********..4444444889************************999998 PP

                       .EEEEE- CS
                B3  92 lvvkvfr 98 
                       ++v +f+
  Eucgr.G00888.2.p 312 FRVYIFS 318
                       8999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2125122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2225122IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-1427120No hitNo description
PROSITE profilePS5086312.87228122IPR003340B3 DNA binding domain
SMARTSM010194.0E-1429122IPR003340B3 DNA binding domain
PfamPF023625.3E-1430121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21218319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-21219318IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465225320IPR003340B3 DNA binding domain
PfamPF023621.2E-14225319IPR003340B3 DNA binding domain
CDDcd100178.73E-17225318No hitNo description
SMARTSM010192.9E-11225320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MASGRRRRRE DGGVDPDTAT GPRLESPHFF KIILSDTLES GKLGIPKKFL RRYGKDLSSL  60
VLLEVLGNST WSMGVEKLND GTVWLWKGWQ EFMQHYSIGP GHLVVFKYKG NSTFRVMIFD  120
RSASEIDYSL SSISNLGSGF ISPKRENVIE VEDSEDFAPC QEKRVDPHSS CSQPSPSCSS  180
PDLEEGIGQS RCRASHPEPN FGGPMSSWPL RSFELACEFD SEYPFFKVVI RPSYIEHHVV  240
NVPRWFIRQH IQQIKEIVTL RHSNRTWPVK LRTYPSGSMQ FSSGWIAFVR GTHLRVGNVC  300
VFELIDRDDI VFRVYIFSSA GRNNESKCRM NRSEPVFCDP TPSRPLTTPE LAGEFDSEHP  360
FFELVIQQSH FRKMATYSRT QERRNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1421131734140B3 domain-containing transcription factor VRN1
4i1k_B3e-1421131734140B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00888.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065661.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_010065663.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4
TrEMBLA0A059BB470.0A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010065661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-38B3 family protein