PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00268.1.p
Common NameEUGRSUZ_G00268
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 290aa    MW: 32692.4 Da    PI: 8.2866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00268.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.91e-2388148259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++WrKY qKe  g+++pr+YYrCt+    gC ++k+v+rs++dp+v+e+tY   H+++
  Eucgr.G00268.1.p  88 DDGFSWRKYDQKENLGAKYPRNYYRCTHGkdrGCLARKRVQRSDDDPSVFEVTYCRAHTCN 148
                       8***************************87889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-2585149IPR003657WRKY domain
SuperFamilySSF1182902.09E-2286149IPR003657WRKY domain
SMARTSM007749.1E-3287149IPR003657WRKY domain
PfamPF031062.2E-2288147IPR003657WRKY domain
PROSITE profilePS5081120.28988145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
GGEREKGLGY GNENKGSPCG AGFSQITFFP NHLKLPRRPP PLDLKYFPKG FRRLQLQEPF  60
HCRKSDERIF FKVRVVPAPK FELPPPPDDG FSWRKYDQKE NLGAKYPRNY YRCTHGKDRG  120
CLARKRVQRS DDDPSVFEVT YCRAHTCNHH SLQIIQPQPQ PQQNQTHLQD IAFDFRGSLT  180
VITPNLDSNN DDHNFCSSMF NFPPTSDNTS SVMSNNSNFP STPQFLSRST SETNYLSESP  240
ARLEGFQVGP SFGTSESELA MIVLAATSEN NSQATVRSDS NLPLHGISW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1788147968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00268.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732595.10.0PREDICTED: probable disease resistance protein At4g27220
TrEMBLA0A059B9I70.0A0A059B9I7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010068019.11e-173(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-26WRKY family protein