PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G00076.4.p | ||||||||
Common Name | EUGRSUZ_G00076, LOC104452462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 566aa MW: 62989.9 Da PI: 7.1887 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++aee+ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Eucgr.G00076.4.p 127 FCKTLTASDTSTHGGFSVLRRHAEEClplldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLIAGDAFIFL--R 215 99****************************975544444..8************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Eucgr.G00076.4.p 216 GEDGELRVGVRR 227 499*******97 PP | |||||||
2 | Auxin_resp | 111 | 1.2e-36 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a +k+s+GmRfkm+fe+e++serr+sGt++gv d+ ++ W+nS+WrsLk Eucgr.G00076.4.p 253 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARAHKLSIGMRFKMKFEGEEVSERRFSGTIIGVGDSMSSGWTNSEWRSLK 335 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-43 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.98E-21 | 125 | 227 | No hit | No description |
Pfam | PF02362 | 7.4E-21 | 127 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.237 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 253 | 335 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MASHPSNHSC GRPHQGAFAD ALYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTN 60 RGLEQQMPSF DLPSKILCRV VNIQLRAEPE TDEVYSQITL LPEPEQKEVT SPDPPLPEPP 120 RCKVHSFCKT LTASDTSTHG GFSVLRRHAE ECLPLLDMTQ QPPWQELVAT DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SSKKLIAGDA FIFLRGEDGE LRVGVRRLMR QQSNMPSSVI 240 SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARAHK LSIGMRFKMK 300 FEGEEVSERR FSGTIIGVGD SMSSGWTNSE WRSLKVQWDE PSSIMRPDRV SSWELEPLVV 360 TAPSNSQQVQ RKRARPTVLP SSSVQELSVF GGPKAPEYSS DFLHGDSQRG RDVYLSPKFS 420 PSARSKSLNY NGNGSPAALS GYTVNWPSHM ETITDPCTPV NGKESSEKRE SGGSGCRLFG 480 VQLLDSAKKE SLSVTLAAGQ RDDDKTALSV DDDSKEHQEP SCVNHFDNPS ACYDPEKSCP 540 NSSQDLQSRQ IRTCIKMVVE LIHVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 6 | 358 | 4 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 6 | 358 | 4 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 6 | 358 | 4 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G00076.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065240.1 | 0.0 | PREDICTED: auxin response factor 1 isoform X2 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A059B975 | 0.0 | A0A059B975_EUCGR; Auxin response factor | ||||
STRING | XP_010065238.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.3 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G00076.4.p |
Entrez Gene | 104452462 |
Publications ? help Back to Top | |||
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