PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00054.1.p
Common NameEUGRSUZ_G00054, LOC104452448
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 433aa    MW: 48500.6 Da    PI: 7.3154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.2e-49301552128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       +pGfrFhPt+eelv +yL++k+egk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  
  Eucgr.G00054.1.p  30 MPGFRFHPTEEELVEFYLRRKIEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRG 121
                       79***************************.89***************8778899*************************************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Eucgr.G00054.1.p 122 ENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 155
                       ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5629176IPR003441NAC domain
PROSITE profilePS5100555.58829176IPR003441NAC domain
PfamPF023658.6E-2531155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAIAAIMSHE DASDTNNNTA KDDHEHDMVM PGFRFHPTEE ELVEFYLRRK IEGKRFNVEL  60
ITFLDLYRYD PWELPALAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
GENSRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPQHET ERYQKAEISL CRVYKRSGVE  180
DHPSLPRTLP TRASSSSSSR STGIISSSDQ NKNHHNMSIS GQSLQLHANA FDRFQAFMGG  240
AGGGQLSSHS AQNNDQADGS SSSDVTTTLG LSKQNVSNAY YPIPPISATA QLALMEEEGM  300
ANFHHQLHSS KQAATPSSVS LVFPHLFPSS SSTNPADDLH RLVNYPQATA ASFNQQQQHP  360
QLQQYYPSQY SQFQGLLLPQ SSSSSSLSQN LTLNKLPSPL QTPFSDRLWE WNPVPDANRE  420
YSDNNNPPFS SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-543117619165NO APICAL MERISTEM PROTEIN
1ut4_B3e-543117619165NO APICAL MERISTEM PROTEIN
1ut7_A3e-543117619165NO APICAL MERISTEM PROTEIN
1ut7_B3e-543117619165NO APICAL MERISTEM PROTEIN
4dul_A3e-543117619165NAC domain-containing protein 19
4dul_B3e-543117619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00054.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065211.10.0PREDICTED: NAC domain-containing protein 35
SwissprotQ9ZVP81e-116NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A059B9J90.0A0A059B9J9_EUCGR; Uncharacterized protein
STRINGXP_010065211.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-113NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]