PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F04424.1.p | ||||||||
Common Name | EUGRSUZ_F04424, LOC104450999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 17949.3 Da PI: 8.2139 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.1 | 1e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa+vhk+FGasnv k+l++l e++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++ Eucgr.F04424.1.p 13 PCAACKLLRRRCARDCVFAPYFPADQPQKFAIVHKVFGASNVNKMLQELLEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQNQ 105 7******************************************************************************************** PP DUF260 94 lallkee 100 lal+++e Eucgr.F04424.1.p 106 LALAQAE 112 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.559 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-44 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MKESGRKQGT LSPCAACKLL RRRCARDCVF APYFPADQPQ KFAIVHKVFG ASNVNKMLQE 60 LLEHQRSDAV SSMVYEANAR MRDPVYGCVG AISSLQQQVD VLQNQLALAQ AEVVHMRLQT 120 PQFPSTSSSA IAATNNDSSH SRRSYYPLNG VEQADVEDSL WS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F04424.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064042.1 | 1e-119 | PREDICTED: LOB domain-containing protein 4 isoform X1 | ||||
Swissprot | Q9SHE9 | 2e-65 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A059C0A2 | 1e-117 | A0A059C0A2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064042.1 | 1e-118 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 9e-44 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F04424.1.p |
Entrez Gene | 104450999 |