PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04380.1.p
Common NameEUGRSUZ_F04380
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 546aa    MW: 59334.2 Da    PI: 7.7962
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-2494195199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+ltpsd+++ g +++p+ +a+++         ++ +   l+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  +
  Eucgr.F04380.1.p  94 FAKTLTPSDANNGGGFSVPRFCADTIfppldfnADPPVQ--LLSVRDVHGAVWNFRHIYRGTPRRHLLTTGWSKFVNNKKLVAGDSVVFM--K 182
                       89******************999999*****96555555..7************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +s++ ++v+++r+
  Eucgr.F04380.1.p 183 NSKGDMFVGIRRA 195
                       79999*****996 PP
2Auxin_resp89.37.1e-30243326183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       a++ a+ + +FevvY+Pra +s+Fvvk+e+ve+alk+ +++GmR+kma+e ed+s+ ++  G++++v   ++  W++S+Wr+L+
  Eucgr.F04380.1.p 243 AVETAARGLPFEVVYYPRAESSDFVVKAERVEEALKSLWTAGMRIKMAVEAEDCSRMTWhHGVISSVGVNENGLWRGSPWRMLQ 326
                       67889999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-3786198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-2989208IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-2093194No hitNo description
PROSITE profilePS5086312.54894196IPR003340B3 DNA binding domain
SMARTSM010192.5E-1994196IPR003340B3 DNA binding domain
PfamPF023629.9E-2394195IPR003340B3 DNA binding domain
PfamPF065071.2E-27243326IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
IPPANSRVYY FPQGHLEQSP AAAAAAPAPI LSPLAVSRTF VPCLVGAVHY FADPLTDEVI  60
AKFLLRPVVH PGAPLQPESP ARAGNEPEEK IVSFAKTLTP SDANNGGGFS VPRFCADTIF  120
PPLDFNADPP VQLLSVRDVH GAVWNFRHIY RGTPRRHLLT TGWSKFVNNK KLVAGDSVVF  180
MKNSKGDMFV GIRRAVRNSG VDCARWREQI GGGRLKVEEE SGLRDGFSRN GRGRVSMEVV  240
VNAVETAARG LPFEVVYYPR AESSDFVVKA ERVEEALKSL WTAGMRIKMA VEAEDCSRMT  300
WHHGVISSVG VNENGLWRGS PWRMLQVTWD EPEAMQDKRS VNPWQVESIG PGSPLDSVYP  360
PVKKLRVPLR SALGTEGESG HFFDMAGFTN PMVPYSSSFF NYNTPIGMQG ARQDASRAFG  420
LVNYVDENPP MYTCNIFGNN VVPKPKPICT DLNIGSSASE TLSTDSPSSW HSFGLEISGN  480
QQCNTSKIGG VSSIQLFGKT IHAMKPAESN LDGVVSPSDD GSKRPGEAGY VSIPPDLSLT  540
CLKAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-67135034356Auxin response factor 1
4ldy_B6e-67135034356Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065144.20.0PREDICTED: auxin response factor 17
TrEMBLA0A059BYJ50.0A0A059BYJ5_EUCGR; Auxin response factor (Fragment)
STRINGXP_010065144.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-147auxin response factor 17