PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04097.1.p
Common NameEUGRSUZ_F04097, LOC104450747
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 387aa    MW: 43505.3 Da    PI: 7.5326
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5381371129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++++k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk
  Eucgr.F04097.1.p   8 VPPGFRFHPTDEELLQYYLKKKISFQKFDM-EVIREVDLNKMEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDK 99 
                       69****************************.99**************964444222455********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        + + +++++g++ktLvfy+grap+g+ktdW+mheyrle
  Eucgr.F04097.1.p 100 CIRN-THKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                       ***9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-616159IPR003441NAC domain
PROSITE profilePS5100558.278159IPR003441NAC domain
PfamPF023653.0E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MASSSGGVPP GFRFHPTDEE LLQYYLKKKI SFQKFDMEVI REVDLNKMEP WELQERCKIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTHKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPQGNPNEDG WVVCRVFKKK NLFKIAGNDS GGQTSAGSDQ  180
NHHHQQLSIN STSNTTAHQP RSFMHRDSSL YLHSNHLSPS TAFELNKPEL ALHYSSHHLP  240
QYSLFPSSQG LIPTPKPIGY HDYTALQSAD TVAPPVMLKQ LMSSNTRDQC ESGSDSFRYQ  300
NCDQGLEVGT CEATQEQMVG ARDEAGMSDW GMLSVTSGAH NQLGNHNEGD SGSKGVRFED  360
GTAATSLHPI NHLSLRGEMD FWGYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-52816117167NO APICAL MERISTEM PROTEIN
1ut4_B1e-52816117167NO APICAL MERISTEM PROTEIN
1ut7_A1e-52816117167NO APICAL MERISTEM PROTEIN
1ut7_B1e-52816117167NO APICAL MERISTEM PROTEIN
4dul_A1e-52816117167NAC domain-containing protein 19
4dul_B1e-52816117167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04097.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063731.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-144BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A059BXQ40.0A0A059BXQ4_EUCGR; Uncharacterized protein
STRINGXP_010063731.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-147NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]