PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03963.1.p
Common NameEUGRSUZ_F03963
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 137aa    MW: 15802.8 Da    PI: 7.5009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03963.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.12.4e-2551301128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lp G+rF P+dee+ ++ L++kv+g+ +   e+i+e+d+y+ ePw++    ++ ek+ y F+k + k+   +r +r++ sgyWk   + ++  
  Eucgr.F03963.1.p   5 LPLGYRFCPSDEEVFSYCLAPKVQGHVVFP-EFIREFDVYEKEPWKFF--NENAEKSFYVFTKLKMKK---SRVERTAGSGYWKGAKS-TDFN 90 
                       699**********************99555.79**************6..234566778888877764...69***********7765.5555 PP

               NAM  94 skkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                       + +++ +g kk L f      + +++++ek +W+mhey++
  Eucgr.F03963.1.p  91 DCHSNIIGQKKHLNFKakdgsSFDSQNAEKGSWIMHEYSM 130
                       55999***********7765445789999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-264133IPR003441NAC domain
PROSITE profilePS5100529.0855136IPR003441NAC domain
PfamPF023652.0E-186129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MADTLPLGYR FCPSDEEVFS YCLAPKVQGH VVFPEFIREF DVYEKEPWKF FNENAEKSFY  60
VFTKLKMKKS RVERTAGSGY WKGAKSTDFN DCHSNIIGQK KHLNFKAKDG SSFDSQNAEK  120
GSWIMHEYSM PNQEVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-16413019145NAC domain-containing protein 19
3swm_B1e-16413019145NAC domain-containing protein 19
3swm_C1e-16413019145NAC domain-containing protein 19
3swm_D1e-16413019145NAC domain-containing protein 19
3swp_A1e-16413019145NAC domain-containing protein 19
3swp_B1e-16413019145NAC domain-containing protein 19
3swp_C1e-16413019145NAC domain-containing protein 19
3swp_D1e-16413019145NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03963.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065056.15e-97PREDICTED: NAC domain-containing protein 19
TrEMBLA0A059BXU75e-98A0A059BXU7_EUCGR; Uncharacterized protein
STRINGXP_010065056.12e-96(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.17e-18NAC domain containing protein 3