PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03941.1.p
Common NameEUGRSUZ_F03941, LOC104452252
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 292aa    MW: 31670.8 Da    PI: 10.6925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03941.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20136185356
               AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr ++ +grW AeIrd +   g r r++lg+f+taeeAa+a++aa+++l+g+
  Eucgr.F03941.1.p 136 YRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTFDTAEEAARAYDAAARRLRGA 185
                       9*******.**********55...2.59*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-31135198IPR001471AP2/ERF domain
PfamPF008478.1E-14135184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-29135192IPR001471AP2/ERF domain
PROSITE profilePS5103222.708135192IPR001471AP2/ERF domain
CDDcd000182.13E-14136193No hitNo description
PRINTSPR003671.2E-10136147IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21136193IPR016177DNA-binding domain
PRINTSPR003671.2E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGQTLNPVP FHAPCEPRSA HETFRFLAEA PFLYVPLFDH RHFHFPPCNL PQHLEIPKFE  60
TRAERETEAK PAVLDGIAAV VGEDVLFGKN ERKKEAEGGG GAARILPPRA VPEAREVHGD  120
DHGDRKARDV AGQRSYRGVR KRPWGRWSAE IRDRVGRCRH WLGTFDTAEE AARAYDAAAR  180
RLRGAKARTN FQIPPVVPFL SRPPPGNGNN SRNRNGGGGG KKRKDGLDGG RKCSVVTSME  240
HLFSSTNGRG VGVGVGGGNG KSNVELDLKL GVGLGLRRNT SATAMAVQAL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151361911571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03941.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065051.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A059BYP20.0A0A059BYP2_EUCGR; Uncharacterized protein
STRINGXP_010065051.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-23ERF family protein