PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03588.1.p
Common NameEUGRSUZ_F03588
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 384aa    MW: 43568 Da    PI: 6.6151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03588.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-53211481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL+ kv +  ++  + i+evd++++ePwdLp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+
  Eucgr.F03588.1.p  21 LPPGFRFHPTDEELITFYLASKVFNGAFSGLD-IAEVDLNRCEPWDLPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVH 112
                       79*************************99955.***************8888999************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +g+l g+kktLvfy+grap+gekt+Wvmheyrl
  Eucgr.F03588.1.p 113 SAaTGALLGMKKTLVFYRGRAPRGEKTKWVMHEYRL 148
                       9978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6317170IPR003441NAC domain
PROSITE profilePS5100559.80121170IPR003441NAC domain
PfamPF023655.6E-2822148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLGVEDLLCE LRREEGNEQG LPPGFRFHPT DEELITFYLA SKVFNGAFSG LDIAEVDLNR  60
CEPWDLPEVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VHSAATGALL  120
GMKKTLVFYR GRAPRGEKTK WVMHEYRLDG HFSCRHTCKD EWVICRIFHK TMEKKSLLFQ  180
GQNYMLEVCS PPSTGSLPQL LETPITSTPP PNHLLEHQSQ ANITTTTHKD SYNNTDTKNI  240
IVTPSLVSPS SMLFKSLLSH QDLFTATNLK EHQHHTVLNQ CKTETNFSHF QLNVDDDNDA  300
DGLHSVVDKI HIVPFHQNHQ SPVLFEMDTH PTTTSSVPDN NNAPHGHTVH HEMSTSTMAF  360
NRVGPSFQML VDPAFRESWP LDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52111733171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03588.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064957.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-101NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A059BWH40.0A0A059BWH4_EUCGR; Uncharacterized protein
STRINGXP_010064957.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-103NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]