PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03475.1.p
Common NameEUGRSUZ_F03475
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 397aa    MW: 43148.2 Da    PI: 7.6482
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03475.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-144491148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed  l++ vk+ G g+W+++ +  g+ R++k+c++rw ++l
  Eucgr.F03475.1.p 44 KGPWTAAEDAVLIEHVKKNGEGNWNSVQKNTGLPRCGKSCRLRWTNHL 91
                      79******************************99***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2153995IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-214293IPR009057Homeodomain-like
SMARTSM007179.4E-144393IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-2345121IPR009057Homeodomain-like
CDDcd001676.72E-114691No hitNo description
PfamPF139214.2E-1347106No hitNo description
PROSITE profilePS500906.02892126IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-1294126IPR009057Homeodomain-like
SMARTSM00717396141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MTKGIASTRQ QQQQHHQNDG RSTGSSSSGS GSAGSGGGGL VLKKGPWTAA EDAVLIEHVK  60
KNGEGNWNSV QKNTGLPRCG KSCRLRWTNH LRPNLKKGSF APEEERLILK LHAQLGNKWA  120
RMATQVMSLS LFSSAFSELP SSQLYLIQPE TDEKQRRGMH WSDSGLMEDL LDDTQALSNQ  180
NPQTQSFMNL QAEKLNVSLR SGCDWHAGSS LNTSAANWGH SHSEIDTRKG FDLPLVQEGI  240
KVEKDSPQRI SSMQDEDLSK LLNAIPSTLQ TGNPEHSTPD LNTHGNICLP LAQEARLEKE  300
NLDPIPSMRA DESKLLNVIP PAIQLSSGYN SSSEFCSRQS SSYSVLLSTR KELPSPALGT  360
TSAEFAEAHA GMTGSCSTIH LLIRSSRLGS RGAYYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-194212325105MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03475.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063022.11e-144PREDICTED: uncharacterized protein LOC104450247
TrEMBLA0A059BW580.0A0A059BW58_EUCGR; Uncharacterized protein
STRINGXP_010063022.11e-144(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.18e-45myb domain protein 120