PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03414.1.p
Common NameEUGRSUZ_F03414, LOC104450197
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 573aa    MW: 64346.4 Da    PI: 5.3016
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03414.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.41.9e-1292025711373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+ +s++d+++ ++l+++ +  +s +g+p+qRl ay+ e+L ar  +s+s++y++l+++e +    ++ l+++++++e++P+lkf
  Eucgr.F03414.1.p 202 LKQLLIACAKSLSDNDMHKFEKLIEKARRAVSISGEPIQRLGAYMIEGLVARKEESGSNIYHTLRCREPE---GKDLLSYMHILYEICPYLKF 291
                       689******************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       ++++aN aI ea ++e+r+HiiDf+i qG+QW +LlqaLa+Rp+gpp +RiTg+++p +   +   le+++ rLa + e++++p+efn  + +
  Eucgr.F03414.1.p 292 GYMAANGAIAEACKNEDRIHIIDFQIAQGTQWTTLLQALAARPSGPPYVRITGIDDPVNRyaRGAGLEAVAGRLAVISEKFKIPVEFNG-LPE 383
                       *********************************************************9999999*************************.599 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                          d++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv++++eqe+++n+++Fl+rf+e+l+yy a+f+s++++lpr
  Eucgr.F03414.1.p 384 FAPDVTRDMLDVRPGEALAVNFPLQLHHTPDESVDITNPRDGLLRMVKSLSPKVITLIEQESNTNTTPFLTRFVETLDYYLAMFESIDVTLPR 476
                       999****************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       + +eri+vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g ++lgWkdr Lvs+
  Eucgr.F03414.1.p 477 DRKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRNLLRYYS-ENYTLVEKDGGMLLGWKDRFLVSA 568
                       *****************************************************************999.55********************** PP

              GRAS 371 SaW 373
                       SaW
  Eucgr.F03414.1.p 569 SAW 571
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.945176553IPR005202Transcription factor GRAS
PfamPF035146.4E-127202571IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MESHPLYRYS ETGAGLSFTS SHPTVPSLPN RLFGHSKFEI RESPISPFST NFDCETLTVL  60
SDNQEQYSST DNYSGVSSSY NSSLETTSGF QRSSPSQDGC RDSLLSCSGR PTSLQNEHHS  120
QNTAYTLQEL EDVLMDDGQE VRVTDTSIGE HVWDQNPRGS QFSCPEDSVA FIQSQSGKSV  180
HAEKHKEAIE ELLVQDVPPG DLKQLLIACA KSLSDNDMHK FEKLIEKARR AVSISGEPIQ  240
RLGAYMIEGL VARKEESGSN IYHTLRCREP EGKDLLSYMH ILYEICPYLK FGYMAANGAI  300
AEACKNEDRI HIIDFQIAQG TQWTTLLQAL AARPSGPPYV RITGIDDPVN RYARGAGLEA  360
VAGRLAVISE KFKIPVEFNG LPEFAPDVTR DMLDVRPGEA LAVNFPLQLH HTPDESVDIT  420
NPRDGLLRMV KSLSPKVITL IEQESNTNTT PFLTRFVETL DYYLAMFESI DVTLPRDRKE  480
RINVEQHCLA RDIVNIIACE GKERVERHEL FGKWKSRLTM AGFRQYPLSS YVNSVIRNLL  540
RYYSENYTLV EKDGGMLLGW KDRFLVSASA WY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6120957125377Protein SCARECROW
5b3h_D1e-6120957125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03414.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062948.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018732329.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A059BVU60.0A0A059BVU6_EUCGR; Uncharacterized protein
STRINGXP_010062948.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-178GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]