PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F03175.1.p | ||||||||
Common Name | EUGRSUZ_F03175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 31651.5 Da PI: 5.4566 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ Ed +l d+++++G g W+++a+ g++R+ k+c++rw +yl Eucgr.F03175.1.p 14 RGAWSNNEDRILTDYIALHGEGKWRKVAQNTGLNRCFKSCRLRWVNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++E++l+++++++lG++ W++Ia++++ gRt++++k++w + Eucgr.F03175.1.p 67 RGTISPDEEDLIIRLHRLLGNR-WALIAARLP-GRTDNEIKNYWKTI 111 78889*****************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.659 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.841 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.22E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGRSPCCAKE GVNRGAWSNN EDRILTDYIA LHGEGKWRKV AQNTGLNRCF KSCRLRWVNY 60 LKPGIKRGTI SPDEEDLIIR LHRLLGNRWA LIAARLPGRT DNEIKNYWKT ILVKKLQAAR 120 PHDKHNLNCE EKVFASDGLV LNQQVNSHHK VLGSTEFSTS NELDKDLEKI INTGAKNKDG 180 DDNDMNFLND GDEDFIFGVS DSSLPSDHEK MEMEEEKDLT GVKNGSFPCL EVCASSCSRD 240 EDRIETQMSN NYDSCDQPSL HMELKKLARF LELEDEFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-21 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F03175.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018730874.1 | 0.0 | PREDICTED: transcription factor MYB82 isoform X1 | ||||
TrEMBL | A0A059BUM5 | 0.0 | A0A059BUM5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064879.1 | 1e-176 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 9e-55 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F03175.1.p |