PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F03169.2.p

Common Name

EUGRSUZ_F03169

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YA

Protein Properties

Length: 193aa MW: 21666.4 Da PI: 10.0469

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F03169.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.2	2.4e-32	33	89	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakl +e+kl +k rkpylheSRh+hA+rRpRgsgGrF Eucgr.F03169.2.p 33 EEPVYVNAKQYHGILRRRQYRAKLGAENKL-IKDRKPYLHESRHHHAVRRPRGSGGRF 89 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-35	31	92	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.225	32	92	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-27	34	89	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.3E-24	35	57	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.3E-24	66	89	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MPAAYGPQAM ISYPQMAGMI PSRLPLPFDT TQEEPVYVNA KQYHGILRRR QYRAKLGAEN 60 KLIKDRKPYL HESRHHHAVR RPRGSGGRFL SKDQKESKFT SLNDESNVKS TARVSSAIDL 120 PNSEVCQLKD HRDTGSTTSC SKTTQTTTSS DAIPVSKFRF FGQPWHVMTT CDPSCDVRYS 180 GDIRHLSLPG ER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	33	97	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F03169.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062677.1	1e-143	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_018731962.1	1e-143	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X2
TrEMBL	A0A059BVZ6	1e-142	A0A059BVZ6_EUCGR; Uncharacterized protein
STRING	XP_010062677.1	1e-142	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-44	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Eucgr.F03169.2.p