PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03040.1.p
Common NameEUGRSUZ_F03040, LOC104449887
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 759aa    MW: 83837.9 Da    PI: 6.3203
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.4e-21105160156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Eucgr.F03040.1.p 105 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQLK 160
                       7999************************************************9877 PP
2START221.82.2e-692744972206
                       HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       l ++a++el k+a+a+ep+W +s+    e++n+de++++f+ +        +s+ea+r++gvv+ +l++lv++++d++ qW+e+++    ka+
  Eucgr.F03040.1.p 274 LVNQAMEELKKMATAGEPLWIRSVetgrEILNYDEYVKEFKVEAPsegrpkRSIEASRETGVVFVDLPRLVQSFMDVN-QWKEMFPcmisKAA 365
                       56789***********************************55544999******************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t++v++sg      ga+qlm+aelq+l+p+vp R+++f+Ry++ql+a++w++vdvS++  +++  ++s+v+++++pSg++ie+ksngh+kv+w
  Eucgr.F03040.1.p 366 TVDVVCSGegpnrnGAVQLMFAELQMLTPMVPtREVYFIRYCKQLSAEQWALVDVSIEKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIW 457
                       **************************************************************98.9*************************** PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       veh ++++ ++h ++r +v+sgla+ga++w+ tlq qce+
  Eucgr.F03040.1.p 458 VEHLECQKTTVHPMYRTIVNSGLAFGARHWMTTLQVQCER 497
                       **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-2190163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-2391156IPR009057Homeodomain-like
PROSITE profilePS5007118.285102162IPR001356Homeobox domain
SMARTSM003895.4E-19104166IPR001356Homeobox domain
PfamPF000461.1E-18105160IPR001356Homeobox domain
CDDcd000864.27E-17109160No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084840.996264500IPR002913START domain
SuperFamilySSF559613.43E-33266497No hitNo description
CDDcd088753.34E-110268496No hitNo description
SMARTSM002341.7E-70273497IPR002913START domain
PfamPF018524.9E-55274497IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-4274492IPR023393START-like domain
SuperFamilySSF559611.92E-13527723No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGVVDMSNNN PPTSRTKDFF ASPALSLSLA GIFRDAGAAA AASASMDVEE GDEGSGGGGG  60
RREDTVEISS ENSGPARSRS DDEFDPDGDN DEDGGDGDKS KKKKRKKYHR HTAEQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQLK AIQERHENSL LKTEMEKLRD  180
ENKAMRDTIQ KSCCPNCGSA TTSRDTALTT QEQQLRIENA RLKAEVEKLR TALGKYTPGT  240
ASPSCSAGND QENRSSLDFY TGIFGLDKSK IMELVNQAME ELKKMATAGE PLWIRSVETG  300
REILNYDEYV KEFKVEAPSE GRPKRSIEAS RETGVVFVDL PRLVQSFMDV NQWKEMFPCM  360
ISKAATVDVV CSGEGPNRNG AVQLMFAELQ MLTPMVPTRE VYFIRYCKQL SAEQWALVDV  420
SIEKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKTTVHP MYRTIVNSGL  480
AFGARHWMTT LQVQCERLVF FMATNVPTKD SNGVATLAGR KSILRLAQRL TQSFCQAIGA  540
SSYHSWTKVP TKTGEDIRVA SRKNLNDPGE PLGVILCAVS SVLLPVSPHV LFDFLRDESR  600
RSEWDIMASG SPVQSIANLA KGQDRGNAVN IQTMKNKDNS MWVLQDCCTN AYESMVVYAP  660
VDITGMQAVM TGCDSSNIAA LPSGFSILPD GIESRPLVIS SRHEEKSSEG GSLLTIAFQI  720
LTNTSPTAKL TVESVESVNT LISCTLRNIR TSLQCEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105KKKKRK
2100106KKKKRKK
3102106KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062490.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A059BUK70.0A0A059BUK7_EUCGR; Uncharacterized protein
STRINGXP_010062490.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]