PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02956.1.p
Common NameEUGRSUZ_F02956, LOC104449806
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23459.2 Da    PI: 8.1872
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02956.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.4e-25958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien   rqvtf+kRr+g+lKKA+ELSvLCda++ + ifs++gklye +
  Eucgr.F02956.1.p  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGLFIFSPHGKLYELA 58
                      79*********************************************965 PP
2K-box57.55.7e-208817513100
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       +    ++e++ Lk+eie L++ +  + G + ++++l eL  Le+qLe+ + + Rs+K+++++++i+ l++ke  l+ +n++L++k+ee
  Eucgr.F02956.1.p  88 QPLDAKEEINILKQEIEALRKGLGYMFGGGAGNMTLDELDVLEKQLETWIYHTRSTKMDIMFQEIQLLRNKEGILKAANQYLQEKIEE 175
                       5556799*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-28176IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.492161IPR002100Transcription factor, MADS-box
CDDcd002658.56E-42278No hitNo description
PRINTSPR004041.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.65689179IPR002487Transcription factor, K-box
PfamPF014864.4E-2092173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGLFIFSP HGKLYELATK  60
GTMKGLIERY MKTTQSQAAL TEEATPSQPL DAKEEINILK QEIEALRKGL GYMFGGGAGN  120
MTLDELDVLE KQLETWIYHT RSTKMDIMFQ EIQLLRNKEG ILKAANQYLQ EKIEENTAIT  180
NTAPMTTNYT YPLTIQNELF QDLLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-15168168MEF2 CHIMERA
6byy_B8e-15168168MEF2 CHIMERA
6byy_C8e-15168168MEF2 CHIMERA
6byy_D8e-15168168MEF2 CHIMERA
6bz1_A9e-15168168MEF2 CHIMERA
6bz1_B9e-15168168MEF2 CHIMERA
6bz1_C9e-15168168MEF2 CHIMERA
6bz1_D9e-15168168MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02956.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062376.11e-152PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388416e-86AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A059BU681e-150A0A059BU68_EUCGR; Uncharacterized protein
STRINGXP_010062376.11e-151(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70522641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-88AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]