PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02910.1.p
Common NameEUGRSUZ_F02910
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 646aa    MW: 73836 Da    PI: 5.0301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.6e-5661331128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeelv +yL++k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++
  Eucgr.F02910.1.p   6 LPPGFRFHPTDEELVAYYLNRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRK 97 
                       79****************************.99***************6434555777*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v s ++++vg+kktLv+y+grap+g +tdWvmheyrl
  Eucgr.F02910.1.p  98 VNS-QNRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                       ***.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-654156IPR003441NAC domain
PROSITE profilePS5100561.8356156IPR003441NAC domain
PfamPF023651.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MAPVALPPGF RFHPTDEELV AYYLNRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QNRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEN ASGLQDAYAL CRVFKKSAVC MKVGERSSSM NLTVSQRSDD  180
LFLESRCDDM ESTDNYSVSL NTCSPSIMNE PSAFDEYPPH EAKWVQPQHE DTFQFPTPSF  240
SNRGALSYPP SQVDIALECA RLQHRFSIPP LRMESHAQDG FASQDLIQQS NPLFSWDANY  300
TAMEDFNFST GKETAYCHLI SDAPFARYND KSCSDLNARN VEIGDWMEDF KMDQGASENL  360
RWVGMSNKDM EKTFGEENKV IPVENISNFQ RCGEEEAQGE ILPSSSYKEL LEDEERGDFP  420
LDFISGDRNG DFLDDGHVDD YSNSLSFEIV EEVKVNHGMF VATRQAAETI FHQMVPSQVV  480
KVQSLNQGMI LNDLPFTSSY PKRRCELIRD SNVRKFESFA RGKFVGMKNS IIPSMKFGSS  540
IVCMFALFLV HLIYLGEDVE YEILIDDSIT ATKDAQHIEE CNFNMRRMRK TASIKWNDKS  600
ENSTSITIDG DGNTRLHWKK TVFCLTIALV LSCVWANQNI LTLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-57116215174NAC domain-containing protein 19
3swm_B3e-57116215174NAC domain-containing protein 19
3swm_C3e-57116215174NAC domain-containing protein 19
3swm_D3e-57116215174NAC domain-containing protein 19
3swp_A3e-57116215174NAC domain-containing protein 19
3swp_B3e-57116215174NAC domain-containing protein 19
3swp_C3e-57116215174NAC domain-containing protein 19
3swp_D3e-57116215174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062323.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A059BTA30.0A0A059BTA3_EUCGR; Uncharacterized protein
STRINGXP_010062323.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-147NAC domain containing protein 28