PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02903.1.p
Common NameEUGRSUZ_F02903
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79902.9 Da    PI: 7.7375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02903.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.21.8e-153889256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++ +++t++q+++Le+ F   r+p++++r++L+++lgL+ +q+k+WFqN+R+++k
  Eucgr.F02903.1.p 38 KTYHRHTPHQTQRLEANF---RTPDENQRRQLSRELGLDPKQIKFWFQNKRTQRK 89
                      678899************...58*****************************998 PP
2START120.62.1e-382324505206
                       HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
             START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                        a++el++ +  +ep+W ks+     ++ +d++ q+f+++        + e++++s++v+m++ +lv+++ld++ +W  ++     ka+ + v
  Eucgr.F02903.1.p 232 YAMDELIRIVRMKEPLWIKSPldgrYILHRDTYEQIFSRNYRfrgsgARLETSKESVLVTMEPSRLVNIFLDVR-KWADMFHtivtKASSIPV 323
                       6899******************99999**********88666999999**************************.******99999******* PP

                       ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
             START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                       +++g        lql+ a + +lsplvp R+++f+R ++q + g wvivdvS +  +      +     +lpSg++i++++ng skvtwvehv
  Eucgr.F02903.1.p 324 LEEGtqlnhrIYLQLIHARMHVLSPLVPaREVYFLRRCQQIELGMWVIVDVSYNYMTGDACPYNTW---RLPSGCVIQDMGNGCSKVTWVEHV 413
                       ****999999999***************************************98877765433455...5*********************** PP

                       E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                       +++++   h l+r lv  gl  ga +w  tlqr ce+
  Eucgr.F02903.1.p 414 EVDDKNQsHKLFRDLVCGGLTYGAERWAITLQRMCER 450
                       **987655***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-151393IPR009057Homeodomain-like
SuperFamilySSF466897.94E-152489IPR009057Homeodomain-like
PROSITE profilePS5007113.23491IPR001356Homeobox domain
SMARTSM003894.9E-113695IPR001356Homeobox domain
CDDcd000866.40E-133892No hitNo description
PfamPF000465.6E-133889IPR001356Homeobox domain
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PROSITE profilePS5084837.786219453IPR002913START domain
SuperFamilySSF559612.61E-26223452No hitNo description
CDDcd088757.54E-89227449No hitNo description
SMARTSM002348.7E-19228450IPR002913START domain
PfamPF018528.6E-31232450IPR002913START domain
SuperFamilySSF559613.16E-12478679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MADSGGSGGS GEEHEHRQDS HPSPNPSSSS RKGKGKSKTY HRHTPHQTQR LEANFRTPDE  60
NQRRQLSREL GLDPKQIKFW FQNKRTQRKT QNERADNTAL RAENERIHCE NLAIMEALKS  120
VICPACGGPP FGEEERQRNL EKLKMENVQL KEEHAKVSKI LAKYIGKPIS QIDLLMPGPR  180
SSADVSTASV PNQGFSGHNV DFVVAPPNPA PWSQLKVIPE TEMADTLEIT AYAMDELIRI  240
VRMKEPLWIK SPLDGRYILH RDTYEQIFSR NYRFRGSGAR LETSKESVLV TMEPSRLVNI  300
FLDVRKWADM FHTIVTKASS IPVLEEGTQL NHRIYLQLIH ARMHVLSPLV PAREVYFLRR  360
CQQIELGMWV IVDVSYNYMT GDACPYNTWR LPSGCVIQDM GNGCSKVTWV EHVEVDDKNQ  420
SHKLFRDLVC GGLTYGAERW AITLQRMCER FAYSMLDDAP THDAVEVGIT TSPVIVVPEG  480
RRNVMKLAHR MVKNFSAGLS MSGKLDFPHL SEVNNSGVRV CVRKSEEPGQ PSGTIVSAAT  540
SLWLPVAPQA VFNFFRNENT RAQWDVLCNG NPVQEIARIP SGTHHGNSIS IIQTSLHAEN  600
MLMLQESCID PLTCMVVYAP IDSTAMTIAL SGEDTSTVQI LPSGFTISSD GRANPGSKPS  660
TSTSSSKPAG TLLTVAFQIL VSSHSGPEQL NVESVATVNT LISATVQKVK AALNCSAPE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02903.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018731153.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC8
TrEMBLA0A059BV030.0A0A059BV03_EUCGR; Uncharacterized protein
STRINGXP_010064845.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11