PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F02725.1.p

Common Name

EUGRSUZ_F02725

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 332aa MW: 35832.5 Da PI: 6.5905

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F02725.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.5	2.5e-37	93	148	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s++tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn+++ Eucgr.F02725.1.p 93 PSCPRCASSHTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKNRRT 148 68***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.602	93	147	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-21	102	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MKYRKHKTHD HESSSSSPPS PSNDFTPPSS SLVLTAHQPP TRLTLKREPR SSLSSLLVTG 60 CEKNTMFAPS SDQAALFQRW GTSSHGGVPA AAPSCPRCAS SHTKFCYYNN YSLSQPRYFC 120 KSCRRYWTKG GSLRNVPVGG GCRKNRRTRP SSRSQAPASG QPERASLAGG QPDSVDKDQS 180 VESPQSGSPA TAAGALDIDM VAVFAKFLNN EQTKSCSQEL TGSTSSAVTP DSVQTAASLD 240 LVEEQAEPPP EVPHAEGLFT ETNGFDHQES SADDLLWVDT TSCLANFAWQ PMVQLQEIGT 300 PPADDHFRLL PTNDNFWSSF DLAGFELSSR P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F02725.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN393719	5e-45	JN393719.1 Sorghum bicolor clone Sbdof25 Dof (Dof) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064809.1	0.0	PREDICTED: dof zinc finger protein DOF1.2
TrEMBL	A0A059BT94	0.0	A0A059BT94_EUCGR; Uncharacterized protein
STRING	XP_010064809.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F02725.1.p