PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F02704.3.p | ||||||||
Common Name | EUGRSUZ_F027042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 846aa MW: 92788 Da PI: 6.3235 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.8 | 4.1e-18 | 249 | 348 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e Eucgr.F02704.3.p 249 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 339 99**************************555567778***************9989999999***9.********************876.66 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++l +++++ Eucgr.F02704.3.p 340 AKLIMGFRK 348 667776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-29 | 241 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-19 | 246 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-22 | 247 | 348 | No hit | No description |
PROSITE profile | PS50863 | 10.912 | 249 | 350 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-16 | 249 | 348 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-19 | 249 | 350 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.455 | 511 | 561 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 9.5E-12 | 516 | 556 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MLLELLDCGG INCATCAKSS GLLPIASDER PSEFGMINVR TGELQSSTTD NHFDSDEVDK 60 LKLIRLRSST DDSGLGQSLL TQYNDTNRSH EPTNREGVIN TPSALEMGGS CYLLSSKASN 120 GATHASQPDI LKANIAAKEF DDPHARTDLS MTIGVPLGKS YPSLRDHSTT PSLSPQGPKS 180 RHVLHKPPKP AFASGFESNA SVVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD 240 SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF 300 RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEA KLIMGFRKAS TSMMQDSQLA 360 AVSNGNHSSE ALISGGFENV PMISGYSSLL HSFKGSTDPQ LNALSKHWSS ASGDISWQGT 420 EKHGLPRDAF LLPGMSAPER KRARNIGSKS KRLLIDSQDA LELKMTWEEL QDLLRPPSVN 480 PSIVTVEDHE FEEYDEPPVF GKSSIFILRS TGGQEQWVQC DSCGKWRRLP VDVLLPPRWT 540 CAENAWDQSR RLCSAPDGLT PRDLENLLRL TKEFKKRKLA TTVRPALEHE SSGLDALANA 600 AIVGDDGDPG TTSVAATTKH PRHRPGCSCI VCIQPPSGKG KHKPTCNCNV CMTVKRRFKT 660 LMMRKKKRQS EREAEIAQRK QLWGSKDEIE VDSTSAHRSS HHNPSENESR IGNELESQSQ 720 TTNSANTFAE TGKGQINLNC QLDLNCQPDR NEDLKLGSSQ TSMMNLLRVA SQPLETYLKQ 780 NGLASLVSEQ QASPAGHVQL QGATTDNEGQ PSEDHCADSE IQEMALEKDD TDEKDSTPDQ 840 GEGDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-68 | 227 | 352 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 654 | 665 | KRRFKTLMMRKK |
2 | 654 | 667 | KRRFKTLMMRKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F02704.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064806.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A059BTA4 | 0.0 | A0A059BTA4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064806.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F02704.3.p |